Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0829
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical p...    27   2.9  
AL110487-11|CAC42369.1|  624|Caenorhabditis elegans Hypothetical...    27   3.8  
AL110487-10|CAC42368.1|  623|Caenorhabditis elegans Hypothetical...    27   3.8  
AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical ...    27   3.8  
AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical ...    27   5.0  
AF078157-11|AAG24070.1|  401|Caenorhabditis elegans Hypothetical...    27   5.0  
AF031837-1|AAC13673.1|  624|Caenorhabditis elegans GLY5c protein.      26   6.6  
AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.      26   6.6  
AF031835-1|AAC13671.1|  623|Caenorhabditis elegans GLY5a protein.      26   6.6  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    26   6.6  
AC006762-3|AAU20834.1|  614|Caenorhabditis elegans Hypothetical ...    26   8.7  

>U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical
           protein T22F3.10 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 21  MQKLIIFALVVLCVGSEAKTFTRCGLVH 104
           M  L  F L + C+G  +  F +CG++H
Sbjct: 309 MLSLSFFILTMCCIGVNSGGFYKCGVLH 336


>AL110487-11|CAC42369.1|  624|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12c protein.
          Length = 624

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 120 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYW 254
           GF+  L  NW  + E +    T   +  R+ +   GLF I+ +Y+
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYF 363


>AL110487-10|CAC42368.1|  623|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12b protein.
          Length = 623

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 120 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYW 254
           GF+  L  NW  + E +    T   +  R+ +   GLF I+ +Y+
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYF 363


>AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12a protein.
          Length = 626

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 120 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYW 254
           GF+  L  NW  + E +    T   +  R+ +   GLF I+ +Y+
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYF 363


>AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical
           protein Y113G7A.1 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 3   SKDTIEMQKLIIFALVV 53
           SK TI+MQ L+IFAL++
Sbjct: 224 SKKTIQMQHLLIFALIL 240


>AF078157-11|AAG24070.1|  401|Caenorhabditis elegans Hypothetical
           protein F25E5.10 protein.
          Length = 401

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 248 VLGSKGASPGKDCNVKCSDLLTDDI 322
           V GS G  PG  CN  C +   DDI
Sbjct: 344 VTGSDGTCPGNPCNGLCVEEDDDDI 368


>AF031837-1|AAC13673.1|  624|Caenorhabditis elegans GLY5c protein.
          Length = 624

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 120 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYW 254
           GF+  L  NW  + E +    T   +  R+ +   GLF I+  Y+
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYF 363


>AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.
          Length = 626

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 120 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYW 254
           GF+  L  NW  + E +    T   +  R+ +   GLF I+  Y+
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYF 363


>AF031835-1|AAC13671.1|  623|Caenorhabditis elegans GLY5a protein.
          Length = 623

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 120 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYW 254
           GF+  L  NW  + E +    T   +  R+ +   GLF I+  Y+
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYF 363


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 145 FLMRFSS--KPCFLSSCTRPHLVNVLASEPTQRTTKAKIINFCISIVSF 5
           FLM FS   K  F        L+N+L    T  + + +++ FCI I+ F
Sbjct: 41  FLMGFSKVYKNAFYKLVQMDLLINLLVYTNTLLSLRLELLPFCIFILKF 89


>AC006762-3|AAU20834.1|  614|Caenorhabditis elegans Hypothetical
           protein Y42G9A.4b protein.
          Length = 614

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 75  KTFTRCG-LVHELRKHGFEENLMRNWVCLVEHESSRDTS 188
           K  T CG LV  L  +G +E ++R  V + E   SRDTS
Sbjct: 11  KVVTVCGELVRSLDANG-KEMVIRREVSVTETRESRDTS 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,427,364
Number of Sequences: 27780
Number of extensions: 133137
Number of successful extensions: 433
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)