Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0829
(351 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33985.1 68417.m04822 expressed protein 29 1.2
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ... 27 2.7
At4g37360.1 68417.m05291 cytochrome P450 family protein cytochro... 27 4.6
At3g03980.1 68416.m00419 short-chain dehydrogenase/reductase (SD... 27 4.6
At2g37370.1 68415.m04583 hypothetical protein 26 6.1
At2g19640.2 68415.m02295 SET domain-containing protein contains ... 26 6.1
At2g19640.1 68415.m02294 SET domain-containing protein contains ... 26 6.1
At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to ... 26 6.1
At4g19940.1 68417.m02921 F-box family protein contains Pfam PF00... 26 8.1
At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia l... 26 8.1
>At4g33985.1 68417.m04822 expressed protein
Length = 154
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 83 HEMRSRA*AEETWLRRKSHEELGMSGRAR 169
H A EE WLR+K + LG GR++
Sbjct: 19 HSWSPDADREEAWLRKKGKQSLGRLGRSK 47
>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 513
Score = 27.5 bits (58), Expect = 2.7
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = -3
Query: 160 TRHTQFLMRFSSKPCFLS---SCTRPHLVNVLASEPTQRTTKAKIINFCISIVSFD 2
TR+ L + SSK S S HLVNV E + R ++ I C S VSF+
Sbjct: 6 TRNMMTLSKRSSKTKTGSVWFSYLEEHLVNVHIFEESPRDSRDAICKLCKSTVSFE 61
>At4g37360.1 68417.m05291 cytochrome P450 family protein cytochrome
P450 monooxygenase, Arabidopsis thaliana, PID:d1029478
Length = 499
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 271 TGAFAAQYRSLIWNNP*SFEPLRF 200
T A+A L+W++P SF+P RF
Sbjct: 392 TNAWAIHRDPLLWDDPTSFKPERF 415
>At3g03980.1 68416.m00419 short-chain dehydrogenase/reductase (SDR)
family protein similar to short-chain type
dehydrogenase/reductase SP:Q08632 [Picea abies]
Length = 270
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 149 PVPHEIFFEAMFPQLMHETASRERFGFRTNAED 51
P+ E+FF+ P+L+ + A+ FG A+D
Sbjct: 210 PIATEMFFDGKTPELVEKIAAESPFGRVGEAKD 242
>At2g37370.1 68415.m04583 hypothetical protein
Length = 697
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 105 ELRKHGFEENLMRNWVCLVEHESSRDTSKT 194
++ H E L + V ++EH SS D SKT
Sbjct: 230 DIEAHTLMEKLDKTKVKVLEHASSEDASKT 259
>At2g19640.2 68415.m02295 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 398
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -3
Query: 142 LMRFSSKPCFLSSCTRP---HLVNVLASEPTQRTTKAKIINFC 23
L+ +S+ P FLSS P H +LAS Q+ +++FC
Sbjct: 43 LLLYSAFP-FLSSSVSPYCDHCFRLLASSAHQKCQSCSLVSFC 84
>At2g19640.1 68415.m02294 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 341
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -3
Query: 142 LMRFSSKPCFLSSCTRP---HLVNVLASEPTQRTTKAKIINFC 23
L+ +S+ P FLSS P H +LAS Q+ +++FC
Sbjct: 43 LLLYSAFP-FLSSSVSPYCDHCFRLLASSAHQKCQSCSLVSFC 84
>At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to
SP|P11832 Nitrate reductase 1 (formerly EC 1.6.6.1)
(NR1){Arabidopsis thaliana}
Length = 917
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 304 VGALNVAVFAWTGAFAAQYRSLIWN 230
+ A +VAV AW +F Q LIWN
Sbjct: 450 LSAKDVAVRAWDESFNTQPDKLIWN 474
>At4g19940.1 68417.m02921 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain;similar to F-box protein Fbx8
(GI:6164735) [Homo
sapiens]|8737673|gb|AV566223.1|AV566223
Length = 411
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -3
Query: 208 LRFVFVLDVSRLLSCSTRHTQFLMRFSSKP---CFLSSCTRPHLVNVLAS 68
+RF V + L CS T L++ SS P LSS HL VL S
Sbjct: 53 MRFKSVSKLWSSLICSRNFTNRLLKLSSPPRLFMCLSSSDNSHLKTVLLS 102
>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia
ligase, putative similar to SP|P17812 CTP synthase (EC
6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
Pfam profile PF00117: glutamine amidotransferase class-I
Length = 556
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 94 PHLVNVLASEPTQRTTKAKIINFC 23
PH + +++P +TKAK+ FC
Sbjct: 211 PHFLACRSAQPLLESTKAKLSQFC 234
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,004,133
Number of Sequences: 28952
Number of extensions: 125175
Number of successful extensions: 397
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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