Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0827
         (562 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    28   0.063
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   7.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 0.063
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 331 YLLTYCL*IIFSK*MLKLKIFFFYFRYILICNRY 432
           +LL YC  IIF+   L    +F+Y   IL+C  Y
Sbjct: 82  HLLFYCPFIIFTVHFLLCTYYFYYAFIILLCVYY 115



 Score = 24.2 bits (50), Expect = 0.78
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +1

Query: 307 ILISNILPYLLTYCL*IIFSK*MLKLKIFFFYFRYILICNRYV 435
           +LI  +  Y   Y   +     +L + I++FY+ ++L C  ++
Sbjct: 231 VLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFI 273


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 147 LLPKIK*KQREITNLYRTSNLGKIRVSIIICGT 245
           ++PK+    R+   LYR + L  I V    CG+
Sbjct: 484 IIPKVLAMSRDQNYLYRMTCLFCINVLAEACGS 516


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,859
Number of Sequences: 336
Number of extensions: 2325
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)