Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0827
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    30   0.27 
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   4.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.6  

>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -1

Query: 196 LYKLVISRCFYLIFGNKIHVYQAQHKPKRLICIN 95
           ++++    C Y + G+ + +Y   ++P+R ICI+
Sbjct: 531 IWRVSTGECLYHLRGHSLRIYSVLYEPERNICIS 564


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 403 NRKKIFSILTFILKKLFRDNM 341
           N K++ S+L F+L K+F +NM
Sbjct: 578 NLKELISLLAFMLPKVFDNNM 598


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 8/31 (25%), Positives = 23/31 (74%)
 Frame = -1

Query: 211  PRFDVLYKLVISRCFYLIFGNKIHVYQAQHK 119
            P+F  +Y+L++S   ++I+G ++ +++A+ +
Sbjct: 2877 PQFVDVYELILSFISFMIYGIELLMFEAKRR 2907


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,492
Number of Sequences: 5004
Number of extensions: 36645
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)