BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0827 (562 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 30 0.27 SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 26 4.4 SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.6 >SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosaccharomyces pombe|chr 1|||Manual Length = 703 Score = 29.9 bits (64), Expect = 0.27 Identities = 9/34 (26%), Positives = 21/34 (61%) Frame = -1 Query: 196 LYKLVISRCFYLIFGNKIHVYQAQHKPKRLICIN 95 ++++ C Y + G+ + +Y ++P+R ICI+ Sbjct: 531 IWRVSTGECLYHLRGHSLRIYSVLYEPERNICIS 564 >SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccharomyces pombe|chr 1|||Manual Length = 944 Score = 25.8 bits (54), Expect = 4.4 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = -1 Query: 403 NRKKIFSILTFILKKLFRDNM 341 N K++ S+L F+L K+F +NM Sbjct: 578 NLKELISLLAFMLPKVFDNNM 598 >SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual Length = 4717 Score = 25.0 bits (52), Expect = 7.6 Identities = 8/31 (25%), Positives = 23/31 (74%) Frame = -1 Query: 211 PRFDVLYKLVISRCFYLIFGNKIHVYQAQHK 119 P+F +Y+L++S ++I+G ++ +++A+ + Sbjct: 2877 PQFVDVYELILSFISFMIYGIELLMFEAKRR 2907 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,978,492 Number of Sequences: 5004 Number of extensions: 36645 Number of successful extensions: 79 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 79 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 236012634 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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