Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0827
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.9  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   4.9  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        22   4.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.5  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 321 HITLLTYILSLNNFFKINVKIENIFFLF 404
           ++  L Y +  N+ +KI+ +I+   FLF
Sbjct: 277 YVMSLWYWIDRNSAYKIDQRIQKGLFLF 304


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
          receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -2

Query: 48 KPF-HFNLTCDTLVPNS 1
          KP   F+ T DT+VPNS
Sbjct: 10 KPLMEFSATLDTVVPNS 26


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 470 TKDRCLRIDIFANSINKS 523
           T+D CL +D++ NS+++S
Sbjct: 1   TED-CLYLDVYTNSLDQS 17


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +1

Query: 313 ISNILPYLLTYCL 351
           ++N++P+LL+ CL
Sbjct: 1   MANVVPWLLSICL 13


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,536
Number of Sequences: 438
Number of extensions: 2705
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)