Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0827
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein ...    34   0.075
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c...    27   8.6  

>At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 374

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 95  IYTY*PFWFV--LCLIHVYFITKNQIKTTRNN 184
           IY +   WFV  L   H+Y I+ NQ+K +RNN
Sbjct: 229 IYCFIALWFVGGLTAFHLYLISTNQVKPSRNN 260


>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 673

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 31  IKVKRFSDF-SRLAIQRVKSKFDLYILTVLVCAVLDTRVFYYQKSNKNN 174
           + VK+  D+  RLA+Q V+S F   IL V+  +  D          KNN
Sbjct: 55  VSVKQNLDWRERLAMQSVRSLFSKEILDVIATSTADLGPLSLDSFKKNN 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,430,262
Number of Sequences: 28952
Number of extensions: 161008
Number of successful extensions: 240
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)