Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0826
         (447 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q26FX9 Cluster: UDP-N-acetylmuramoyl-tripeptide--D-alan...    33   3.7  
UniRef50_Q0DJV3 Cluster: Os05g0224700 protein; n=2; Oryza sativa...    32   6.5  
UniRef50_Q22HH7 Cluster: Von Willebrand factor type A domain con...    31   8.6  

>UniRef50_Q26FX9 Cluster:
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; n=1; Flavobacteria bacterium BBFL7|Rep:
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase - Flavobacteria bacterium BBFL7
          Length = 417

 Score = 32.7 bits (71), Expect = 3.7
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 262 NGTTTTYKMVESQLSDSFNLDGILSELGQLREVPVAILT 378
           NG TTT +++ S L   FN+ G L  L     VP+ IL+
Sbjct: 97  NGKTTTKELILSVLGQQFNVKGTLGNLNNHIGVPLTILS 135


>UniRef50_Q0DJV3 Cluster: Os05g0224700 protein; n=2; Oryza
           sativa|Rep: Os05g0224700 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 782

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = -2

Query: 278 VVVVPFHLMCSHCSPSYVFALRLIALSLQNEILFRIQLLKYSVFN*NEAD 129
           V+V+   L+CSH SP    ++RL+   L+ E    +Q   +S F+ NEA+
Sbjct: 710 VLVLKLGLLCSHSSPKVRPSMRLVMQYLEREA--TLQDFAFSFFSINEAN 757


>UniRef50_Q22HH7 Cluster: Von Willebrand factor type A domain
           containing protein; n=3; Tetrahymena thermophila
           SB210|Rep: Von Willebrand factor type A domain
           containing protein - Tetrahymena thermophila SB210
          Length = 796

 Score = 31.5 bits (68), Expect = 8.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 3   RLHL*SDHTRPARCVQVDIEHSCCSDTS-SIRFY*LCSTKLNNVSFILIK 149
           ++ L SDH     C+  D +  C  DTS ++RFY   + KL  V  I  K
Sbjct: 460 QMSLISDHDDSINCIVPDPQQICYIDTSKTLRFYIFLNRKLEEVQQIKFK 509


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 343,369,333
Number of Sequences: 1657284
Number of extensions: 4819526
Number of successful extensions: 10692
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10691
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23183027945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)