Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0826
         (447 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25417| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)                     27   9.3  

>SB_25417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -1

Query: 441 SGENIIENXQFAGKXSLNDTSSKNSNXXFPKLPELTKDAV*IERVRQLRLHHFVSGCRPV 262
           S + I ++ Q  GK S      + +N  +    E+ +    +ERV   + HH+ SG RP 
Sbjct: 176 SDKCITDDYQKCGKFSRFCVGEQWTNFVY----EIVRPTCRVERVGCFKDHHY-SGARPF 230

Query: 261 SPYVQS 244
             YVQ+
Sbjct: 231 PEYVQT 236


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 269  VPFHLMCSHCSPSYVFALRLIALSLQNEIL 180
            VP  L CSHC P  V    L+ +  Q EIL
Sbjct: 2711 VPLSLCCSHCIPGPVHIFVLLPIR-QKEIL 2739


>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
          Length = 534

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 57  IEHSCCSDTSSIRFY*LCSTKLNNV 131
           I H   +D+S +RFY + + KLN V
Sbjct: 392 ITHFLSNDSSKVRFYKIYNNKLNRV 416


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,036,843
Number of Sequences: 59808
Number of extensions: 155952
Number of successful extensions: 376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)