Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0824
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    33   0.024
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    28   0.69 
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   2.1  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    26   2.8  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    26   3.7  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   4.9  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    25   4.9  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   6.5  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   6.5  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    25   6.5  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   8.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   8.5  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    25   8.5  

>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 33.1 bits (72), Expect = 0.024
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
 Frame = -1

Query: 350 KASNRNDGQWSATNMSL*SFAKPVYDAAYVSKPRWGFQRRSIPSHCF---HYL----LGE 192
           K +N   G  +A  +        V    +++ P WG+ R +IP H     HY+     GE
Sbjct: 140 KKNNAEPGSGTACRIYGQLVVNRVNGQLHITAPGWGYGRSNIPFHSLNFTHYIEELSFGE 199

Query: 191 YQPALV 174
           Y PALV
Sbjct: 200 YYPALV 205


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 417 FFMQCVIQIYVICGHDIGYGHFQSFQSQ*RTVVCYKHEPIKFCKTSI 277
           F  +CV++ Y     + G   F+SF       + ++HE I+FCK ++
Sbjct: 140 FLRKCVVE-YEQFSFEQGVQFFKSFLQYRAPSMDFQHEGIEFCKINV 185


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 257 WKHTLRHILVLQNFIGSCL 313
           WK TL  +LVLQ  I  CL
Sbjct: 124 WKETLSSLLVLQGNISQCL 142


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 47  NTKRVVKLRFSDELVFIVDSKFRVFSLKK 133
           N KR+V+    DEL  +VD K   F+ KK
Sbjct: 70  NGKRIVQKAVFDELCSLVDPKVDAFTPKK 98


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 120 NTRNLLSTMKTNSSENRNFTTLLVFFNKYLYHYVSSWQ 7
           ++RN LS M+       NF T +V  +K   HY+ + Q
Sbjct: 127 SSRNRLSNMELEVLRALNFDTHIVIPHKLAIHYLQTLQ 164


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 184 LHWFSCVHFEHYWRV 140
           + WFSC HF   W+V
Sbjct: 345 MSWFSCNHFYPEWKV 359


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = -3

Query: 81  SENRNFTTLLVFFNKYLY 28
           +E++N +T L+F+NK++Y
Sbjct: 56  NESQNVSTRLIFWNKWIY 73


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +2

Query: 140 NPPIMFEMNTAEPMQVDIPPEDNENNET---ECYVVENPT 250
           +PP   E+     +    PP D E NET   E  ++E P+
Sbjct: 14  DPPSYEEVALHSALNNSAPPNDGEQNETSMEEMEIIEPPS 53


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 66  FTTLLVFFNKYLYHYVSSWQ 7
           F+++L  F   LY Y+S+W+
Sbjct: 141 FSSILTQFASLLYFYISTWE 160


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -1

Query: 323 WSATNMSL*SFAKPVYDAAYVSKPRWGFQR 234
           W A   SL    +P  D   +  P+W  +R
Sbjct: 89  WKAVEQSLRRTGRPKLDVVLIHSPKWPVRR 118


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 349 LKMAISYVMTTYNVNLYHTL 408
           +++A+  V+TTYNV+L  T+
Sbjct: 477 IRLALFCVLTTYNVSLSQTI 496


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -3

Query: 177 GSAVFISNIIGGF*AFFNENTRNLLSTMKTNSSENRNFTTLLVFFNKYLYHYVSSW 10
           G  V + N I G   F+      LLS  K NS   R   TL    ++++  Y ++W
Sbjct: 568 GEVVKVKNRIDG--RFYAVKKLVLLSDDKENSRILREVMTLSRLHHEHVVRYYTAW 621


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 248 WGFQRRSIPSHCFHYLLGEYQP 183
           W FQR+     C   L G Y+P
Sbjct: 115 WFFQRKVFTRQCLRILGGSYRP 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,763
Number of Sequences: 5004
Number of extensions: 46027
Number of successful extensions: 127
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)