Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0824
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0115 - 915142-915321,915397-915631,916301-916386,916474-91... 42 2e-04
07_03_1203 - 24848342-24848885,24849199-24849204,24849648-248499... 29 1.6
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624... 29 1.6
11_06_0676 + 26152192-26152367,26152669-26152708,26152857-261529... 28 3.7
06_01_1188 + 10219546-10219664,10220855-10223660 28 3.7
05_06_0230 + 26585439-26586608 28 3.7
09_06_0028 + 20328599-20328821,20330659-20330735,20330806-203309... 27 6.5
01_06_1586 - 38465662-38466267,38467986-38468079,38468169-38468455 27 6.5
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 27 8.6
>03_01_0115 -
915142-915321,915397-915631,916301-916386,916474-916590,
917271-917591,918386-918772
Length = 441
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +1
Query: 250 LGLETYAASYTGFAKLYRLMFVADHC--PSLRLEALKMAISYVMTTYNVNLYHTLHKKLS 423
L +E YAA YTG +L RL+F+A+ C ++ LEAL+MA + + + + K++
Sbjct: 34 LDVEAYAAQYTGRTRLARLLFIAERCGVEAVELEALRMAYDEIKRGEDTMFHREVTNKIN 93
>07_03_1203 -
24848342-24848885,24849199-24849204,24849648-24849947,
24852725-24853047,24853076-24853255
Length = 450
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 350 KASNRNDGQWSATNMSL*SFAKPVYDAAYVSKPRW 246
K S+ +D QW + MSL + + + AY+ P W
Sbjct: 289 KTSSLSDDQWESITMSLSDVWESIREGAYLGGPIW 323
>01_01_0802 +
6246267-6247541,6247625-6247682,6247806-6248129,
6248321-6248355
Length = 563
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 143 PPIMFEMNTAEPMQVDI-PPEDNENNETECYV 235
PP+ ++ EP +DI PP++N ++ E YV
Sbjct: 420 PPVQETLHNPEPESIDIEPPKENTADDNERYV 451
>11_06_0676 +
26152192-26152367,26152669-26152708,26152857-26152966,
26153886-26153934,26154157-26154206,26154606-26155150,
26155583-26155743,26156231-26156440,26156525-26156690,
26156765-26156869,26157465-26157760
Length = 635
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 158 EMNTAEPMQVDIPPEDNENNETECYVVENPTLVWKHTLRH 277
++NT E V +D E EC+ ++ +WK T++H
Sbjct: 357 QINTVEEF-VKALNKDEEKIRNECFKLKKDNKLWKDTIKH 395
>06_01_1188 + 10219546-10219664,10220855-10223660
Length = 974
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 195 PQKIMKTMRRNATSLKTPPWFGNIRCVI 278
P +K ++ N + TP WFGN++ ++
Sbjct: 807 PPPFLKRLKLNGSLADTPNWFGNLKQLV 834
>05_06_0230 + 26585439-26586608
Length = 389
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 14 DET***RYLLKNTKRVVKL-RFSDELVFIVDSKFRVFSLKK 133
DET RYL+++ K+++ + R+S + S FRVF +KK
Sbjct: 235 DETVLARYLVESRKKLLMVVRYSSGRQHLPTSAFRVFQMKK 275
>09_06_0028 +
20328599-20328821,20330659-20330735,20330806-20330968,
20331095-20331156,20331250-20331328,20331818-20331898,
20332068-20332216,20332254-20332319,20332495-20332643,
20332722-20332761,20333001-20333015
Length = 367
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 227 CYVVENPTLVWKHTLRHILVLQNFIGSC 310
CYV E+P HT R + +L+ I C
Sbjct: 315 CYVTESPATTTGHTYRLVALLETTICMC 342
>01_06_1586 - 38465662-38466267,38467986-38468079,38468169-38468455
Length = 328
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -2
Query: 235 DVAFRLIVFIIFWGNINLHWFSCVHFEHYWRVLGLF**KYAKFT 104
D +R I+ +I W I + W +HY+ + L +Y T
Sbjct: 91 DWEYRCILIVIHWEYIGIDWIGFFRVDHYFVRIALSTDRYLLLT 134
>06_03_1190 - 28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 328 PSLRLEALKMAISYVMTTYNVNLYHTLHKKLSEAVASAGLPDIAGSQD 471
P + A K+A T NVN Y LH + + + D AG+++
Sbjct: 893 PEIEEMAEKLATRMRNRTGNVNPYMALHLRFEKGMVGLSFCDFAGTRE 940
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,408,515
Number of Sequences: 37544
Number of extensions: 272831
Number of successful extensions: 555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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