BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0824 (503 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_16132| Best HMM Match : Somatostatin (HMM E-Value=0.42) 30 1.2 SB_37524| Best HMM Match : p450 (HMM E-Value=0) 29 1.6 SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35) 29 2.9 SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0 SB_53774| Best HMM Match : efhand (HMM E-Value=0.012) 27 8.8 >SB_16132| Best HMM Match : Somatostatin (HMM E-Value=0.42) Length = 307 Score = 29.9 bits (64), Expect = 1.2 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +2 Query: 221 TECYVVENPTLVWKHTLR 274 T CY V T++WKHTLR Sbjct: 245 TPCYRVRPCTIIWKHTLR 262 >SB_37524| Best HMM Match : p450 (HMM E-Value=0) Length = 362 Score = 29.5 bits (63), Expect = 1.6 Identities = 12/51 (23%), Positives = 28/51 (54%) Frame = +1 Query: 349 LKMAISYVMTTYNVNLYHTLHKKLSEAVASAGLPDIAGSQDIPVLDTIWVE 501 L A+ Y++ +N ++ LHK++ + + P ++ +++PVL+ E Sbjct: 177 LGWAVIYLL--HNPDVQERLHKEIDDVIGRDAFPQLSKRKELPVLEAFTAE 225 >SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35) Length = 1208 Score = 28.7 bits (61), Expect = 2.9 Identities = 14/51 (27%), Positives = 28/51 (54%) Frame = +1 Query: 349 LKMAISYVMTTYNVNLYHTLHKKLSEAVASAGLPDIAGSQDIPVLDTIWVE 501 L AI+Y++ +N + LHK++ + + P ++ ++IPVL+ E Sbjct: 1077 LSWAIAYLL--HNPGVQARLHKEIDQVIGRDVSPKLSQRKNIPVLEAFTAE 1125 >SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 990 Score = 27.9 bits (59), Expect = 5.0 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = +2 Query: 206 NENNETECYVVENPTLVWKHTLRHIL 283 ++N + +C + TL+WK TL H + Sbjct: 392 SQNKDGQCQGINPMTLLWKETLHHAI 417 >SB_53774| Best HMM Match : efhand (HMM E-Value=0.012) Length = 918 Score = 27.1 bits (57), Expect = 8.8 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +2 Query: 221 TECYVVENPTLVWKHTLR 274 T C +V T++WKHTLR Sbjct: 346 TPCDLVRPCTVIWKHTLR 363 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,616,733 Number of Sequences: 59808 Number of extensions: 317146 Number of successful extensions: 723 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 670 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 723 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1099461690 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -