Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0824
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical ...    43   1e-04
U41276-3|AAA82470.2|  517|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical ...    29   2.5  
AL032660-2|CAA21751.1|  690|Caenorhabditis elegans Hypothetical ...    28   3.3  
L16621-6|AAA28229.1|   67|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U64852-5|AAB04968.1|  746|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    27   5.8  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    27   5.8  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    27   5.8  
AF077534-7|AAK71376.1|  319|Caenorhabditis elegans Prion-like-(q...    27   5.8  
AC024770-1|AAF59482.1|  261|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical
           protein Y59A8A.1 protein.
          Length = 601

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +1

Query: 250 LGLETYAASYTGFAKLYRLMFVADHCPSLRLEALKMAISYVMT-TYNVNLYHTLHKKLSE 426
           + +E+ A SY   A   R  F+A HCP LR +A    I+Y+   T ++  Y     +L  
Sbjct: 84  IDIESLACSYDSNAFFLRARFIARHCPILRADAYISLINYLKEHTTDITHYVAFFNELES 143

Query: 427 AVASAGLPDIAGSQDIPVLDTIWVE 501
            +A     +   +  IP+ D  W+E
Sbjct: 144 ELARKEFKNRQLNFQIPLRDQKWIE 168


>U41276-3|AAA82470.2|  517|Caenorhabditis elegans Hypothetical
           protein C52B11.3 protein.
          Length = 517

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +2

Query: 170 AEPMQVDIPPEDNENNETECYVVENPT-LVWKHTLRHI----LVLQNFIGSCL 313
           AE + + + P  +  N+T  +  E P  +VW+H L  I    + L    G+CL
Sbjct: 10  AEDLYITMTPSVSTENDTTVWATEEPAAIVWRHPLLAIALFSICLLTVAGNCL 62


>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical protein
            T19A5.1 protein.
          Length = 1280

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 200  LGEYQPALVQLCSFRTLLEGFRPFLMKIREIYC 102
            +G+YQ AL    S  +L   F+P   KIR IYC
Sbjct: 1240 IGDYQRALNFYYSTLSLQANFQPAKDKIRTIYC 1272


>AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical
           protein Y56A3A.4 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 140 NPPIMFEMNTAEPMQVDIPPEDNEN-NETE 226
           NP I   ++T  PMQ  IPP+ ++N NE +
Sbjct: 21  NPQIAAALSTNSPMQQGIPPQGHQNPNEQQ 50


>AL032660-2|CAA21751.1|  690|Caenorhabditis elegans Hypothetical
           protein Y70G10A.3 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -3

Query: 207 LSSGGISTCIGSAVFISNIIGGF*AFFNENTRNLLSTMKTNSS 79
           LS+     CI   +F S II GF AF  +    LLST  T +S
Sbjct: 329 LSNPTFLVCIFVGIFESIIINGFAAFMPKILETLLSTNPTLAS 371


>L16621-6|AAA28229.1|   67|Caenorhabditis elegans Hypothetical
           protein ZK688.4 protein.
          Length = 67

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = -3

Query: 234 T*HSVSLFSLSSGGISTCIGSAVFISNIIGGF*AFFNENTRNLLSTMKTNSSENRNFTTL 55
           T HSVS F + S  I   + SAV ++        FF E  R   ST       N+N TT+
Sbjct: 9   TVHSVSNFYIFSSTI--LLTSAVILAIFFFFGDGFFREKYRREFSTNSKEKDGNKNLTTV 66


>U64852-5|AAB04968.1|  746|Caenorhabditis elegans Hypothetical
           protein W01A11.5 protein.
          Length = 746

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -2

Query: 385 YMWS*HRIWPFSKLPIAMTDSGLLQT*AYKVLQNQYMTQRMFPNQGGVFNDVA 227
           Y W  + +WP   +P   T   L  T  YK  +N  +   + P  G    ++A
Sbjct: 31  YNWIENTLWPIKPIPFVATTVALAATLHYKYPENAILD--LLPKFGSEVAEIA 81


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 161  MNTAEPMQVDIPPEDNENNETECYVVENPTLVWKHTLRHILVLQN 295
            +  A+P+ V  PP+  E+ +  CY+ +  T  W   L  +LV+ N
Sbjct: 1223 LKMAQPLHV--PPKPPESAKLRCYLYDLTTSRWFKQLFAVLVVVN 1265


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 161  MNTAEPMQVDIPPEDNENNETECYVVENPTLVWKHTLRHILVLQN 295
            +  A+P+ V  PP+  E+ +  CY+ +  T  W   L  +LV+ N
Sbjct: 1201 LKMAQPLHV--PPKPPESAKLRCYLYDLTTSRWFKQLFAVLVVVN 1243


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 161  MNTAEPMQVDIPPEDNENNETECYVVENPTLVWKHTLRHILVLQN 295
            +  A+P+ V  PP+  E+ +  CY+ +  T  W   L  +LV+ N
Sbjct: 1223 LKMAQPLHV--PPKPPESAKLRCYLYDLTTSRWFKQLFAVLVVVN 1265


>AF077534-7|AAK71376.1|  319|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 48
           protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -2

Query: 271 QRMFPNQ-GGVFNDVAFRLIVFIIFWGNINL---HWFSCVH 161
           Q+   NQ G VFN    +LI+ ++ WGN  +     FSC H
Sbjct: 155 QKFIANQLGSVFNQFQGQLILELVPWGNSRIMRDGSFSCNH 195


>AC024770-1|AAF59482.1|  261|Caenorhabditis elegans Hypothetical
           protein Y39H10A.4 protein.
          Length = 261

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 101 DSKFRVFSLKKA*NPPIMFEMNTAEPMQVDIPP 199
           D +FRV  + ++ NP  +F++    P+ V +PP
Sbjct: 100 DYQFRVIIVIRSSNPAAVFDIIRPRPIPVQLPP 132


>Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical
           protein ZK662.5 protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 227 CYVVENPTLVWKHTLRHILVLQNFIGSCL 313
           C  +E PT +   T  H++ LQ  +  C+
Sbjct: 309 CDRIEQPTYISDETFNHLIYLQRLLQKCM 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,862,107
Number of Sequences: 27780
Number of extensions: 257387
Number of successful extensions: 714
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)