Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0824
         (503 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CS...    46   2e-05
At1g30590.1 68414.m03742 RNA polymerase I specific transcription...    27   7.2  

>At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CSN
           complex subunit 1 (CSN1) / COP11 protein (COP11) / FUSCA
           protein (FUS6) FUSCA6, COP11, CSN1; identical to FUS6
           GI:432446, SP:P45432 from [Arabidopsis thaliana];
           contains Pfam profile PF01399: PCI domain; identical to
           cDNA CSN complex subunit 1 (CSN1) GI:18056652
          Length = 441

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
 Frame = +1

Query: 250 LGLETYAASYTGFAKLYRLMFVADHC---PSLRLEALKMAISYVMTTYNVNLYHTLHKKL 420
           L +E YAA Y G  K+ RL+F+A+HC    +L+ +AL+MA   +    N  L+  +  K+
Sbjct: 34  LDIEAYAALYKGRTKIMRLLFIANHCGGNHALQFDALRMAYDEIKKGENTQLFREVVNKI 93

Query: 421 SEAVASAGLPDIA 459
              +      D+A
Sbjct: 94  GNRLGEKYGMDLA 106


>At1g30590.1 68414.m03742 RNA polymerase I specific transcription
           initiation factor RRN3 family protein weak similarity to
           RNA polymerase I transcription factor RRN3 [Homo
           sapiens] GI:7670100; contains Pfam profile PF05327: RNA
           polymerase I specific transcription initiation factor
           RRN3
          Length = 604

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = -3

Query: 417 FFMQCVIQIYVICGHDIGYGHFQSFQSQ*R---TVVCYKHEPIKFCKTSI*RSVCFQTKV 247
           F+  C   +YV+C           FQSQ R   +++ +K  P+  C  S+      Q K 
Sbjct: 412 FYSGCQAILYVLCFRMRSIVEIPRFQSQFRSLESILSHKLNPLLVCLPSVVSEFLKQAKA 471

Query: 246 G 244
           G
Sbjct: 472 G 472


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,067,136
Number of Sequences: 28952
Number of extensions: 233768
Number of successful extensions: 538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)