Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0823
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.3  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.0  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   4.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 139  AVKIKTRIAILSAPFC*PTQKTELCKMPKSATSFPLPNLTW 17
            +V++  +IA     F   T K ++ K+P  A   P P +TW
Sbjct: 1272 SVRVPAKIASFDDKFT-ATYKEDV-KLPCLAVGVPAPEVTW 1310



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 49  ATSFPLPNLTWPRA 8
           A  FP P +TW +A
Sbjct: 702 ADGFPKPQVTWKKA 715


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 517 SRGPSLLLQPTDDVISLTTT*IVDRTAIPEEFESRVSSYTVALGEILFLSC 365
           ++G  L   P   +  LTT  ++ +  IP+E     S YT  + +I    C
Sbjct: 270 AKGGKLACPPAIFIFDLTTDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDC 320


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 552 SSLACSADVTSTAGGQVFF 496
           S+L C A +  T GG  FF
Sbjct: 255 STLHCWATIYKTEGGNAFF 273


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 552 SSLACSADVTSTAGGQVFF 496
           S+L C A +  T GG  FF
Sbjct: 255 STLHCWATIYKTEGGNAFF 273


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 49 ATSFPLPNLTW 17
          AT FP P +TW
Sbjct: 46 ATGFPRPEITW 56


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 567 LWASISSLACSADVTSTA 514
           L+A   SLAC+A+ +S A
Sbjct: 342 LFAKFPSLACAAEPSSDA 359


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 129 LKHALRYYRHLFASLLRRRNSVKCRK 52
           LKH     R   AS++ R+ +V C K
Sbjct: 165 LKHPWICQRERVASVVHRQETVDCLK 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,761
Number of Sequences: 438
Number of extensions: 2690
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)