Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0822
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 128 3e-31
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 67 8e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 49 2e-07
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 42 3e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 1e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 34 0.007
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 33 0.012
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 3.2
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 3.2
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 3.2
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 4.3
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 4.3
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 24 5.6
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 24 7.5
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 24 7.5
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 24 7.5
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 24 7.5
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 24 7.5
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 23 9.8
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 23 9.8
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 23 9.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 128 bits (308), Expect = 3e-31
Identities = 60/93 (64%), Positives = 68/93 (73%)
Frame = +2
Query: 62 DDDVAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGXPRXQGVMVGMGQKDSYVGXEAQSK 241
++++AALV+DNGSGMCKAGFAG DAPRAVFPSIVG PR G+MVGMGQKDSYVG EAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 242 RGILIXXXXXXXXXXXXGMTWRRSGHHTFYNDL 340
RGIL + HHTFYN+L
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNEL 94
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 66.9 bits (156), Expect = 8e-13
Identities = 31/62 (50%), Positives = 41/62 (66%)
Frame = +2
Query: 68 DVAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGXPRXQGVMVGMGQKDSYVGXEAQSKRG 247
D + +DNGSG KAGFAG D P+ +FP+ VG + + VM QKD +VG EAQ+ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 248 IL 253
+L
Sbjct: 68 LL 69
Score = 36.3 bits (80), Expect = 0.001
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 256 LKYPIEHGIITNWDDMEKIWA 318
++ PIE GII NW DME+IW+
Sbjct: 71 IQRPIERGIIQNWSDMEEIWS 91
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 49.2 bits (112), Expect = 2e-07
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +2
Query: 74 AALVVDNGSGMCKAGFAGXDAPRAVFPSIVGXP--RXQGVMVGMGQKDSYVGXEAQSKRG 247
A +V+DNG+G K G+A + PR FPSIVG P R + + KD VG EA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 248 IL 253
+L
Sbjct: 64 LL 65
Score = 30.3 bits (65), Expect = 0.086
Identities = 9/20 (45%), Positives = 18/20 (90%)
Frame = +1
Query: 256 LKYPIEHGIITNWDDMEKIW 315
+KYP+E+GII ++++M ++W
Sbjct: 67 VKYPMENGIIRDFEEMNQLW 86
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 41.5 bits (93), Expect = 3e-05
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +2
Query: 80 LVVDNGSGMCKAGFAGXDAPRAVFPSIVGXPRXQGVMVG--MGQKDSYV 220
+++DNG+G K G+AG DAP VFP+++ R G G + K SY+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYM 55
Score = 37.1 bits (82), Expect = 7e-04
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 256 LKYPIEHGIITNWDDMEKIWAPHLLQ 333
L YPI HG I NWD ME+ W L +
Sbjct: 90 LDYPIRHGQIENWDHMERFWQQSLFK 115
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 39.5 bits (88), Expect = 1e-04
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 65 DDVAALVVDNGSGMCKAGFAGXDAPRAVFPSIVG 166
D+V+A+V+D GS + GF+G D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 33.9 bits (74), Expect = 0.007
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +2
Query: 2 AAVESIPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGXPR 175
A E + + PT + F+ +D+ LV+DNGS +AG+ G P+ VF ++V R
Sbjct: 5 AVREPVFSGPTPS---FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 25.4 bits (53), Expect = 2.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 265 PIEHGIITNWDDMEKI 312
P E +I+NWD ME++
Sbjct: 86 PFERNVISNWDLMEQV 101
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 33.1 bits (72), Expect = 0.012
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 65 DDVAALVVDNGSGMCKAGFAGXDAPRAVFPSIVG 166
+++ +LV+D GS + G+AG ++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.0 bits (52), Expect = 3.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 324 VWCPDLLHVIPVGDDTVLDGVLQMRIPLLLWAS 226
+WCP +L+ D V G+ IP LL S
Sbjct: 242 IWCPIILYEFYGNDRQVQAGMSSFLIPSLLGVS 274
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.0 bits (52), Expect = 3.2
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = +1
Query: 247 YPHLKYPI----EHGIITNWDDMEKIWAPHL 327
Y H +P+ H + NW+ K WAP L
Sbjct: 600 YRHKCFPVLVIVPHATVANWERELKKWAPFL 630
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 3.2
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +3
Query: 126 ATTRPAPSSRPSXVALATRA*WSVWARKTPTWVTRPRAREVSSSEVPH 269
ATT A S+ LAT A S TP V + RE S+S +P+
Sbjct: 176 ATTSKASSAHTD--TLATSASNSDRGASTPEMVVKAEKREGSTSPIPY 221
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 4.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 80 LVVDNGSGMCKAGFAG 127
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 24.6 bits (51), Expect = 4.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +1
Query: 241 ERYPHLKYPIEHGIITNWDDMEKIWAP 321
E YP ++PI+ I W+ M + P
Sbjct: 1369 EHYPSGEFPIDRKFILYWEPMYPVSGP 1395
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 24.2 bits (50), Expect = 5.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 117 VSPATTRPAPSSRPSXVALATRA*WSVWARKTPTWVTRPRAREVSSSEVPHR 272
V+P P PSS PS +L S+ R +P T+P + S + +R
Sbjct: 562 VTPQAPSPLPSSNPSQASLTEE---SLSTRSSP---TKPSTTSLRSQSLVNR 607
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 23.8 bits (49), Expect = 7.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 222 VTRPRAREVSSSEVPHRAR 278
V+ P+A+EVS V H+A+
Sbjct: 820 VSAPKAKEVSEKPVSHQAK 838
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 23.8 bits (49), Expect = 7.5
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -3
Query: 288 GDDTVLDGVLQMRIPLLLWASXPT*ESFWPIPTIT-PWXRG 169
GDD L G R +LW P + P+P + W G
Sbjct: 94 GDDATLSGETIKRAAAILWHKIPEYQD-QPVPNFSNGWLEG 133
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 23.8 bits (49), Expect = 7.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 139 GRVVAGETGLAHAGAIVDYKRSNIVVA 59
G+V+ G++ A A DYK+ ++A
Sbjct: 4 GKVIEGQSVAEWASAYFDYKKGKKIIA 30
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 23.8 bits (49), Expect = 7.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 339 RSL*KVWCPDLLHVIPVGDDTVLDGVLQ 256
+ L K WCPD+ GD L +L+
Sbjct: 139 KELAKRWCPDIPAYDKKGDHRALSDILE 166
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 23.8 bits (49), Expect = 7.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 87 STMAPACARPVSPATTRPAPSS 152
S AP+ P +P+T +P PS+
Sbjct: 107 SITAPSKTEPSTPSTEKPEPST 128
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 23.4 bits (48), Expect = 9.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 108 ARPVSPATTRPAPSSRPSXV 167
+ P P+ +PA SSRP V
Sbjct: 532 SHPAKPSNAQPADSSRPYAV 551
>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 624
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 256 DEDTSLALGLVTHVGVF 206
DEDT ++LGL TH F
Sbjct: 458 DEDTIISLGLNTHPTFF 474
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 26 SPTQTHTKFKMCDDDVAALVVDNGSG 103
+PT K + DDD+ A+ NG G
Sbjct: 338 APTDYIHKLALSDDDLLAVACKNGYG 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,155
Number of Sequences: 5004
Number of extensions: 25882
Number of successful extensions: 99
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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