Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0821
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    25   8.7  
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    25   8.7  

>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 125 SIMKTVTKLN*DQLFLFLNINCVMD*HDRRVFS 223
           S++  + KL  D++ L +  NC+ D HD R  S
Sbjct: 107 SVVPNILKLP-DEVLLVILENCIRDLHDLRYLS 138


>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 315 SLVTFFCKCKIIFNQSVV 262
           SL+TFFCK  +IF    V
Sbjct: 89  SLITFFCKLCVIFGLGFV 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,009
Number of Sequences: 5004
Number of extensions: 37091
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)