Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0821
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          29   0.036
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      29   0.036
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.4  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 29.1 bits (62), Expect = 0.036
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 312 LVTFFCKCKIIFNQSVVVSGCT*FLS*TSKLKTRRSCQSITQFMFK 175
           L T+F KC  + N +V V      +    +LK RR+C +  +F +K
Sbjct: 461 LYTYFDKCDTLINNAVAVENFKGGM--YLRLKARRACMNYERFTYK 504


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 29.1 bits (62), Expect = 0.036
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 312 LVTFFCKCKIIFNQSVVVSGCT*FLS*TSKLKTRRSCQSITQFMFK 175
           L T+F KC  + N +V V      +    +LK RR+C +  +F +K
Sbjct: 461 LYTYFDKCDTLINNAVAVENFKGGM--YLRLKARRACMNYERFTYK 504


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 385 NGDXFDLRANFSVC 344
           NGD +DL+ N  VC
Sbjct: 426 NGDQYDLKKNLKVC 439


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 55  IISNVPNHFVSRSRTSSLNYTFVKHYENSN 144
           IIS++ N  +  +     NY    +Y N+N
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNKYNYNNNN 110


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = -3

Query: 556 VFVESVHHARK*VHRLXPW 500
           + + +VH+ +   H++ PW
Sbjct: 317 IVILNVHYRKPSTHKMAPW 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,261
Number of Sequences: 438
Number of extensions: 2338
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)