BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0820 (662 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 178 5e-46 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 95 8e-21 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 94 2e-20 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 88 1e-18 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 58 9e-10 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 54 2e-08 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 44 1e-05 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 31 0.20 SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 3.2 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.2 SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.2 SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 25 7.4 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 178 bits (434), Expect = 5e-46 Identities = 79/83 (95%), Positives = 81/83 (97%) Frame = +3 Query: 255 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 434 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LL Sbjct: 46 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLL 105 Query: 435 TEAPLNPKANREKMTQIMFETFN 503 TEAPLNPK+NREKMTQI+FETFN Sbjct: 106 TEAPLNPKSNREKMTQIIFETFN 128 Score = 91.5 bits (217), Expect = 1e-19 Identities = 39/44 (88%), Positives = 43/44 (97%) Frame = +1 Query: 124 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255 +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MV Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMV 45 Score = 74.5 bits (175), Expect = 1e-14 Identities = 35/37 (94%), Positives = 36/37 (97%) Frame = +2 Query: 509 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619 A YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYE Sbjct: 131 AFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 167 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 95.1 bits (226), Expect = 8e-21 Identities = 38/85 (44%), Positives = 62/85 (72%) Frame = +3 Query: 246 RDGGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 425 + G + KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102 Query: 426 VLLTEAPLNPKANREKMTQIMFETF 500 +LLTE P+NP ANREKM + MFE + Sbjct: 103 ILLTEPPMNPVANREKMCETMFERY 127 Score = 61.3 bits (142), Expect = 1e-10 Identities = 26/36 (72%), Positives = 33/36 (91%) Frame = +2 Query: 512 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619 +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE Sbjct: 132 VYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYE 167 Score = 48.0 bits (109), Expect = 1e-06 Identities = 21/35 (60%), Positives = 26/35 (74%) Frame = +1 Query: 130 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 234 E A +V+DNG+G K G+A D+ PR FPSIVGRP Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 93.9 bits (223), Expect = 2e-20 Identities = 41/81 (50%), Positives = 57/81 (70%), Gaps = 1/81 (1%) Frame = +3 Query: 264 QKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTE 440 QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE Sbjct: 53 QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112 Query: 441 APLNPKANREKMTQIMFETFN 503 PL N+EK+ + +ET N Sbjct: 113 PPLANIRNKEKIAEYFYETLN 133 Score = 55.2 bits (127), Expect = 8e-09 Identities = 22/37 (59%), Positives = 29/37 (78%) Frame = +1 Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 252 + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVM 48 Score = 54.4 bits (125), Expect = 1e-08 Identities = 23/37 (62%), Positives = 32/37 (86%) Frame = +2 Query: 509 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619 A+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+ Sbjct: 136 ALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYD 172 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 87.8 bits (208), Expect = 1e-18 Identities = 38/79 (48%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Frame = +3 Query: 270 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 446 D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132 Query: 447 LNPKANREKMTQIMFETFN 503 LNP NRE +IMFE+FN Sbjct: 133 LNPPENRENTAEIMFESFN 151 Score = 42.3 bits (95), Expect = 6e-05 Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 8/46 (17%) Frame = +2 Query: 506 AAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYE 619 A +Y+A+QAVL+L AS + TG V+DSGDGV+H +P+ E Sbjct: 153 AGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAE 198 Score = 40.7 bits (91), Expect = 2e-04 Identities = 14/28 (50%), Positives = 23/28 (82%) Frame = +1 Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 225 +++DNG+G K G+AG+DAP VFP+++ Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 58.4 bits (135), Expect = 9e-10 Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Frame = +3 Query: 246 RDGGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 422 RD + + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116 Query: 423 PVLLTEAPLNPKANREKMTQIMFETFN 503 P+ +TE NP R MT+++FE +N Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYN 143 Score = 35.9 bits (79), Expect = 0.005 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = +1 Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 237 LV+DNGS +AG+ G+ P+ VF ++V R R Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58 Score = 25.4 bits (53), Expect = 7.4 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%) Frame = +2 Query: 524 IQAVLSLYASGR--TTGIVLDSGDGVSHTVPI 613 I + S Y + + ++GIVL+ G+ SH +P+ Sbjct: 151 IDGLFSFYHNTKPSSSGIVLNLGNAASHVIPV 182 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 54.0 bits (124), Expect = 2e-08 Identities = 24/62 (38%), Positives = 35/62 (56%) Frame = +3 Query: 312 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 491 + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122 Query: 492 ET 497 E+ Sbjct: 123 ES 124 Score = 40.3 bits (90), Expect = 2e-04 Identities = 16/34 (47%), Positives = 24/34 (70%) Frame = +1 Query: 127 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 228 +EV+A+V+D GS + GF+G+D P+ V PS G Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42 Score = 25.8 bits (54), Expect = 5.6 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +2 Query: 509 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619 A Y+A Q + +ASG+ T ++D G S IY+ Sbjct: 129 ATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYD 165 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 44.4 bits (100), Expect = 1e-05 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Frame = +3 Query: 267 KDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 440 ++ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108 Query: 441 APLNPKANREKMTQIMFE 494 NP++ R+++ + FE Sbjct: 109 PSWNPQSVRQQIMEAAFE 126 Score = 36.7 bits (81), Expect = 0.003 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = +1 Query: 127 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 228 EE+ +LV+D GS + G+AG+++P + PS G Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 30.7 bits (66), Expect = 0.20 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Frame = +3 Query: 327 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 494 PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171 >SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1666 Score = 26.6 bits (56), Expect = 3.2 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Frame = +3 Query: 387 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFN 503 +Y L E+HP+LLT+ A L P+ + ++ +I ++ N Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSEN 1439 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 26.6 bits (56), Expect = 3.2 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +1 Query: 172 KAGFAGDDAP-RAVFPSIVGRPRHQGVMVVWD 264 KA F+G R+ + VG+P H G++ WD Sbjct: 1533 KAKFSGQKGTLRSKYSLEVGKPMHYGIISEWD 1564 >SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces pombe|chr 2|||Manual Length = 226 Score = 26.2 bits (55), Expect = 4.2 Identities = 10/25 (40%), Positives = 18/25 (72%) Frame = +3 Query: 429 LLTEAPLNPKANREKMTQIMFETFN 503 +L APL+ + +KM +++FET+N Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205 >SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schizosaccharomyces pombe|chr 1|||Manual Length = 567 Score = 25.4 bits (53), Expect = 7.4 Identities = 16/40 (40%), Positives = 17/40 (42%) Frame = -2 Query: 610 GHGVGDTVAGVQHDTGGTTGRVQREHGLDGDVHGGVLNVS 491 G G GDTV GG GR R D D H + N S Sbjct: 139 GRGAGDTVVSRSSGAGGARGR--RFGWKDYDKHQRLRNAS 176 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,828,917 Number of Sequences: 5004 Number of extensions: 59374 Number of successful extensions: 171 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 168 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 301829700 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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