Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0820
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   178   5e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    95   8e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    94   2e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    88   1e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    58   9e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    54   2e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    44   1e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    31   0.20 
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   3.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.2  
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    26   4.2  
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    25   7.4  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  178 bits (434), Expect = 5e-46
 Identities = 79/83 (95%), Positives = 81/83 (97%)
 Frame = +3

Query: 255 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 434
           GMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LL
Sbjct: 46  GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLL 105

Query: 435 TEAPLNPKANREKMTQIMFETFN 503
           TEAPLNPK+NREKMTQI+FETFN
Sbjct: 106 TEAPLNPKSNREKMTQIIFETFN 128



 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 39/44 (88%), Positives = 43/44 (97%)
 Frame = +1

Query: 124 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MV
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMV 45



 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +2

Query: 509 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
           A YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYE
Sbjct: 131 AFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 167


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 95.1 bits (226), Expect = 8e-21
 Identities = 38/85 (44%), Positives = 62/85 (72%)
 Frame = +3

Query: 246 RDGGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 425
           + G +  KD  VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P    
Sbjct: 43  KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102

Query: 426 VLLTEAPLNPKANREKMTQIMFETF 500
           +LLTE P+NP ANREKM + MFE +
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERY 127



 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 26/36 (72%), Positives = 33/36 (91%)
 Frame = +2

Query: 512 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
           +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE
Sbjct: 132 VYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYE 167



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +1

Query: 130 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 234
           E A +V+DNG+G  K G+A D+ PR  FPSIVGRP
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 41/81 (50%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
 Frame = +3

Query: 264 QKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTE 440
           QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L   PEEHP+LLTE
Sbjct: 53  QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112

Query: 441 APLNPKANREKMTQIMFETFN 503
            PL    N+EK+ +  +ET N
Sbjct: 113 PPLANIRNKEKIAEYFYETLN 133



 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = +1

Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 252
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVM 48



 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 23/37 (62%), Positives = 32/37 (86%)
 Frame = +2

Query: 509 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
           A+  ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+
Sbjct: 136 ALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYD 172


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 38/79 (48%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
 Frame = +3

Query: 270 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 446
           D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE P
Sbjct: 73  DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132

Query: 447 LNPKANREKMTQIMFETFN 503
           LNP  NRE   +IMFE+FN
Sbjct: 133 LNPPENRENTAEIMFESFN 151



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 8/46 (17%)
 Frame = +2

Query: 506 AAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYE 619
           A +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ E
Sbjct: 153 AGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAE 198



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 14/28 (50%), Positives = 23/28 (82%)
 Frame = +1

Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 225
           +++DNG+G  K G+AG+DAP  VFP+++
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
 Frame = +3

Query: 246 RDGGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 422
           RD  + +  + VG++   + G  ++ + P E  +++NWD ME++  +TF  +L +   EH
Sbjct: 58  RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116

Query: 423 PVLLTEAPLNPKANREKMTQIMFETFN 503
           P+ +TE   NP   R  MT+++FE +N
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYN 143



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +1

Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 237
           LV+DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58



 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 524 IQAVLSLYASGR--TTGIVLDSGDGVSHTVPI 613
           I  + S Y + +  ++GIVL+ G+  SH +P+
Sbjct: 151 IDGLFSFYHNTKPSSSGIVLNLGNAASHVIPV 182


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 24/62 (38%), Positives = 35/62 (56%)
 Frame = +3

Query: 312 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 491
           + +K  I +G V NWD    +W +    +L+  P EHP+L+TE   NP  NR K  + MF
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122

Query: 492 ET 497
           E+
Sbjct: 123 ES 124



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +1

Query: 127 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 228
           +EV+A+V+D GS   + GF+G+D P+ V PS  G
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 509 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
           A Y+A Q   + +ASG+ T  ++D G   S    IY+
Sbjct: 129 ATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYD 165


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = +3

Query: 267 KDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 440
           ++ YV DE Q    I  + +K    +GI+ +W+     W      +L+V P E+ +++TE
Sbjct: 49  RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108

Query: 441 APLNPKANREKMTQIMFE 494
              NP++ R+++ +  FE
Sbjct: 109 PSWNPQSVRQQIMEAAFE 126



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 127 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 228
           EE+ +LV+D GS   + G+AG+++P  + PS  G
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +3

Query: 327 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 494
           PI+ G V +W+ ++  W H  Y+ L   P +    +PV L         +RE  TQ  FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 387  FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFN 503
            +Y  L    E+HP+LLT+  A L P+ +  ++ +I  ++ N
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSEN 1439


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 172  KAGFAGDDAP-RAVFPSIVGRPRHQGVMVVWD 264
            KA F+G     R+ +   VG+P H G++  WD
Sbjct: 1533 KAKFSGQKGTLRSKYSLEVGKPMHYGIISEWD 1564


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 429 LLTEAPLNPKANREKMTQIMFETFN 503
           +L  APL+ +   +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -2

Query: 610 GHGVGDTVAGVQHDTGGTTGRVQREHGLDGDVHGGVLNVS 491
           G G GDTV       GG  GR  R    D D H  + N S
Sbjct: 139 GRGAGDTVVSRSSGAGGARGR--RFGWKDYDKHQRLRNAS 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,917
Number of Sequences: 5004
Number of extensions: 59374
Number of successful extensions: 171
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)