Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0820
(662 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 185 2e-47
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 185 2e-47
SB_56| Best HMM Match : Actin (HMM E-Value=0) 185 2e-47
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 185 2e-47
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 185 2e-47
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 94 1e-19
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 2e-19
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 72 4e-13
SB_54| Best HMM Match : Actin (HMM E-Value=0) 68 6e-12
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 68 8e-12
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 2e-08
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 55 4e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 49 4e-06
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.051
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.090
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 34 0.12
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.63
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2) 30 1.9
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_15108| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_26535| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_9336| Best HMM Match : Taeniidae_ag (HMM E-Value=0.9) 28 7.8
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 185 bits (451), Expect = 2e-47
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +3
Query: 255 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 434
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 47 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 435 TEAPLNPKANREKMTQIMFETFN 503
TEAPLNPKANREKMTQIMFETFN
Sbjct: 107 TEAPLNPKANREKMTQIMFETFN 129
Score = 95.1 bits (226), Expect = 5e-20
Identities = 43/46 (93%), Positives = 45/46 (97%)
Frame = +1
Query: 118 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 46
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/37 (94%), Positives = 37/37 (100%)
Frame = +2
Query: 509 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
AMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYE
Sbjct: 132 AMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYE 168
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 185 bits (451), Expect = 2e-47
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +3
Query: 255 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 434
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 46 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 105
Query: 435 TEAPLNPKANREKMTQIMFETFN 503
TEAPLNPKANREKMTQIMFETFN
Sbjct: 106 TEAPLNPKANREKMTQIMFETFN 128
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/44 (93%), Positives = 44/44 (100%)
Frame = +1
Query: 124 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 45
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/37 (94%), Positives = 37/37 (100%)
Frame = +2
Query: 509 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
AMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYE
Sbjct: 131 AMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYE 167
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 185 bits (451), Expect = 2e-47
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +3
Query: 255 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 434
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 46 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 105
Query: 435 TEAPLNPKANREKMTQIMFETFN 503
TEAPLNPKANREKMTQIMFETFN
Sbjct: 106 TEAPLNPKANREKMTQIMFETFN 128
Score = 93.5 bits (222), Expect = 1e-19
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +1
Query: 124 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 45
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/37 (94%), Positives = 37/37 (100%)
Frame = +2
Query: 509 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
AMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYE
Sbjct: 131 AMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYE 167
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 185 bits (451), Expect = 2e-47
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +3
Query: 255 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 434
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 47 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 435 TEAPLNPKANREKMTQIMFETFN 503
TEAPLNPKANREKMTQIMFETFN
Sbjct: 107 TEAPLNPKANREKMTQIMFETFN 129
Score = 99.5 bits (237), Expect = 2e-21
Identities = 44/46 (95%), Positives = 46/46 (100%)
Frame = +1
Query: 118 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 46
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/37 (94%), Positives = 37/37 (100%)
Frame = +2
Query: 509 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
AMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYE
Sbjct: 132 AMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYE 168
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 185 bits (451), Expect = 2e-47
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +3
Query: 255 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 434
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL
Sbjct: 47 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 435 TEAPLNPKANREKMTQIMFETFN 503
TEAPLNPKANREKMTQIMFETFN
Sbjct: 107 TEAPLNPKANREKMTQIMFETFN 129
Score = 95.1 bits (226), Expect = 5e-20
Identities = 41/46 (89%), Positives = 45/46 (97%)
Frame = +1
Query: 118 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 46
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +2
Query: 509 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
AMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYE
Sbjct: 132 AMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYE 168
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 93.9 bits (223), Expect = 1e-19
Identities = 42/45 (93%), Positives = 42/45 (93%)
Frame = +3
Query: 255 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 389
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 46 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/44 (93%), Positives = 44/44 (100%)
Frame = +1
Query: 124 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 45
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/37 (94%), Positives = 37/37 (100%)
Frame = +2
Query: 509 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
AMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYE
Sbjct: 94 AMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYE 130
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 92.7 bits (220), Expect = 2e-19
Identities = 42/88 (47%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Frame = +3
Query: 240 SGRDGGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPE 416
S + G + KD VGDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPR 103
Query: 417 EHPVLLTEAPLNPKANREKMTQIMFETF 500
VLLTE PLNP NREKM ++MFE +
Sbjct: 104 NTKVLLTEPPLNPMKNREKMIEVMFENY 131
Score = 62.1 bits (144), Expect = 4e-10
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = +2
Query: 494 NIQHAAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
N Q +Y+AIQAVL+LYA G TG+V+DSGDGV+H P+YE
Sbjct: 130 NYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYE 171
Score = 44.4 bits (100), Expect = 8e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 136 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 234
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 72.1 bits (169), Expect = 4e-13
Identities = 33/37 (89%), Positives = 35/37 (94%)
Frame = +2
Query: 509 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
A+YVAIQAVLSLYASGRTTG+V DSGDGVSH VPIYE
Sbjct: 10 AVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYE 46
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 68.1 bits (159), Expect = 6e-12
Identities = 30/45 (66%), Positives = 37/45 (82%)
Frame = +3
Query: 369 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 503
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFN 2173
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/36 (77%), Positives = 33/36 (91%)
Frame = +2
Query: 512 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
MYVA+QAV++LYASGRTTG V D GDGVSHTVP+Y+
Sbjct: 2177 MYVAVQAVMALYASGRTTGTVFDCGDGVSHTVPVYD 2212
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 243
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 67.7 bits (158), Expect = 8e-12
Identities = 28/37 (75%), Positives = 37/37 (100%)
Frame = +2
Query: 509 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
A+++++QAVLSLYA+GRTTG+VLD+GDGVSH+VPIYE
Sbjct: 157 ALFISMQAVLSLYATGRTTGVVLDAGDGVSHSVPIYE 193
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = +3
Query: 417 EHPVLLTEAPLNPKANREKMTQIMFETFN 503
+HPVLLTEAPLNP+ NREK ++ FETFN
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFN 154
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 127 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 243
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +3
Query: 255 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 434
G+ D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 32.3 bits (70), Expect = 0.36
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 563 TGIVLDSGDGVSHTVPI 613
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 55.2 bits (127), Expect = 4e-08
Identities = 22/59 (37%), Positives = 38/59 (64%)
Frame = +3
Query: 327 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 503
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYN 61
Score = 34.7 bits (76), Expect = 0.068
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = +2
Query: 509 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
A ++ +VL+ +A+GR+ G+V+DSG + VP+++
Sbjct: 64 AFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHD 100
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +1
Query: 112 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLI 740
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +2
Query: 527 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 619
Q LSLYASG T G+ L SG + IYE
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYE 797
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 240 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 124
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 35.1 bits (77), Expect = 0.051
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Frame = +3
Query: 240 SGRDGGM-GQKDS---YVGDEAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELR 404
SG+ GG G+ DS VG++ S I L+ P + +VT+++ E++ H F +
Sbjct: 100 SGKIGGRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGI 159
Query: 405 VAP--EEHPVLLTEAPLNPKANRE 470
P HPV++TE NP R+
Sbjct: 160 NTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.090
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 276 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 398
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 130 EVAALVVDNGSGMCKAGFAGDDAPRAV 210
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 8/41 (19%)
Frame = +2
Query: 521 AIQAVLSLYASG-------RT-TGIVLDSGDGVSHTVPIYE 619
A +AVL+L AS RT TG V+DSGDGV+H +P+ E
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAE 80
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 215 GNTARGASSPAKPALHIPEPLSTT 144
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 215 GNTARGASSPAKPALHIPEPLSTT 144
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 215 GNTARGASSPAKPALHIPEPLSTT 144
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2)
Length = 694
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = -3
Query: 597 ETPSPESSTIPVVRPDAYSESTAWMATYMAAC*MFRT*SGSSSLC 463
ETP+P + P PDA TAW+ T A FRT S S C
Sbjct: 169 ETPTPALESAPAAMPDA--TDTAWV-TAKARLYFFRTCRPSPSRC 210
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 215 GNTARGASSPAKPALHIPEPLSTT 144
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 215 GNTARGASSPAKPALHIPEPLSTT 144
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_15108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 443 SPQPQGQQREDDPDHVRNIQHAAMYVAIQAVL-SLYASGRTTGIV 574
+P+ G+ DP V ++HA +Y+ + L + +A GR + IV
Sbjct: 49 NPRINGEDNNQDPRPVLRLRHAQVYLGVLGPLGTRHAHGRISFIV 93
>SB_26535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 443 SPQPQGQQREDDPDHVRNIQHAAMYVAIQAVL-SLYASGRTTGIV 574
+P+ G+ DP V ++HA +Y+ + L + +A GR + IV
Sbjct: 49 NPRINGEDNNQDPRPVIRLRHAQVYLGVLGPLGTRHAHGRISFIV 93
>SB_9336| Best HMM Match : Taeniidae_ag (HMM E-Value=0.9)
Length = 219
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 607 HGVGDTVAGVQHDT-GGTTGRVQREHGLDGDVHGGVLNVSNMIWVIFSLLALGLR 446
HG D + +D GG G + G+DGD G + V ++ ++ ++ L +R
Sbjct: 5 HGESDGIGYGDNDVDGGVDGYNDGDGGVDGDNDGATVMVMVVVVIVVMVVVLMVR 59
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,921,800
Number of Sequences: 59808
Number of extensions: 534812
Number of successful extensions: 1778
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1772
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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