Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0819
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    31   0.073
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   0.39 
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    27   1.6  
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    27   1.6  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    26   3.6  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   6.3  

>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 31.5 bits (68), Expect = 0.073
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 309 LVLIFMISVFGVKNNGNIVFVIMLTLLQXLCG-MCFGFVI 425
           +V +F I++FGVK  G + F++    +  +CG +  G +I
Sbjct: 203 IVFLFFINIFGVKGYGEMEFIMSTIKVVAMCGFIILGIII 242


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 431 GRYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHE-DEHQRRLSAHH 288
           G++H+ + HA    ++S    EDD     D   ++HE D+  R   AHH
Sbjct: 154 GKHHKGK-HAKGKGKKSHPKPEDDSVFFDDERPKHHEFDDEDREFPAHH 201


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 28  LLETCDYNPKLGDIPIDFMDPIYGNKNPSFTDFVAPGVILTIV 156
           L+ T   N +L + PIDF   +YG K     D    GV + +V
Sbjct: 365 LVLTATTNTELLEEPIDFWSDVYGFKMNGMKDASYKGVSVQVV 407


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 43  DYNPKLGDIPIDFMDPIYGNKNPSFTDFV 129
           ++N  +G++PI F+D +YG       D +
Sbjct: 196 EHNYTIGEVPIAFVDRLYGESKLGMDDIL 224


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 108 PFVHRLRSSRRHINHRILPRRGPDIVSVDRGTDGGXPGPILGXRSVSRXILFXQ--VVNQ 281
           PFV +L S+ R +++  + +   D+  V R      P P+    S+     F Q  +V +
Sbjct: 113 PFVQKLDSTLRVLDYNAINKFSIDLTPVQRKHVDMPPPPVFSQTSLPMSYNFLQNPLVGR 172

Query: 282 FVVMCGQTALV 314
             +  G+T +V
Sbjct: 173 VRLPNGKTTIV 183


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 263 EQDXPGDTPATQNRSRXPSIRSTINADDVRATARKNTMVNMTPGATK 123
           E    G  P   NR+  PS +ST + + ++A    +  +   PG  +
Sbjct: 134 EDGQQGFIPLLVNRNSDPSEKSTFSLNILKAIKETDEEIKKNPGKAR 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,930,802
Number of Sequences: 5004
Number of extensions: 37357
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)