Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0819
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 32 0.22
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 30 1.2
10_01_0075 - 979335-979954,980136-980405,980949-980989,981563-98... 29 1.6
05_01_0193 + 1400963-1401083,1401671-1401888,1401983-1402172,140... 29 1.6
03_01_0221 + 1752500-1752868,1753301-1753436,1753850-1753989,175... 28 3.6
11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198 28 4.8
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 4.8
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471 28 4.8
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 28 4.8
02_01_0326 - 2230617-2230735,2231430-2231493,2231646-2231849,223... 27 6.3
11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756... 27 8.4
06_01_0292 + 2136637-2137050,2137162-2137671 27 8.4
03_04_0147 + 17690840-17691687,17692328-17692532,17693048-176931... 27 8.4
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 32.3 bits (70), Expect = 0.22
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 215 SWTDSGXPECLPXNPVLASRXPIRGDVRTDGAGAHLHDIG 334
SW P P P A + P DVR +G GA+LHD G
Sbjct: 70 SWYPRSPP---PAGPAAAEKAP-EEDVRAEGEGAYLHDAG 105
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -3
Query: 341 AEHRYHEDEHQRRLSAHHHELVXDLXEQDXPGDTPATQNRSRXPSIRSTINADDVRATAR 162
++H+ H+ +HQ+ HHH+ V Q P TP + R+ I A+ A+ +
Sbjct: 29 SQHQQHQHQHQQPPHPHHHQYV---QRQPQPQQTPHNSQHQQWLR-RNQIAAEAAGASEQ 84
Query: 161 K 159
K
Sbjct: 85 K 85
>10_01_0075 -
979335-979954,980136-980405,980949-980989,981563-981663
Length = 343
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -3
Query: 431 GRYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHE 282
G ++EP A S + D +L A H +HQ+ + HHH+
Sbjct: 69 GAFYEPPARNLGLQLMSSVPADRDTKHLLSATPFLHHHQHQQYVPHHHHQ 118
>05_01_0193 +
1400963-1401083,1401671-1401888,1401983-1402172,
1402391-1402782,1402971-1403381
Length = 443
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 7 YRDF-AKGLLETCDYNPKLGDIPIDFMDPIYGNKNPS 114
YRD + +L DYNPKL D + + P G+K+ S
Sbjct: 214 YRDLKSPNILLDKDYNPKLSDFGLAKLGPFEGDKHVS 250
>03_01_0221 +
1752500-1752868,1753301-1753436,1753850-1753989,
1754083-1754206,1754960-1755363
Length = 390
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 7 YRDF-AKGLLETCDYNPKLGDIPIDFMDPIYGNKN 108
YRDF A +L DY PKL D + P+ G +
Sbjct: 203 YRDFKASNILLDVDYTPKLSDFGLAKNGPVAGRSH 237
>11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198
Length = 546
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 153 DG*YDAGSYEVCERRVLI-PVYGVHEVDRDVAQLRVVVARLKQTLSEV 13
DG G VC R LI PVY +DR V + ++RL + +S +
Sbjct: 334 DGARRRGQLFVCNHRTLIDPVYVSVALDRPVRAVSYSLSRLSELISPI 381
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 344 DAEHRYHEDEHQRRLSAHHHELVXDL 267
D H YH HQRR HHH D+
Sbjct: 552 DHHHHYHGGHHQRR--RHHHPPAWDV 575
>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
Length = 331
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 120 RLRSSRRHINHRILPRRGPDIVSVDRGT 203
+L S+ + + R LP++G DIV++ +GT
Sbjct: 7 QLASTVKKVTSRELPKKGADIVNMSQGT 34
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = -2
Query: 126 EVCERRVLIPVYGVHEVDRDVAQLRVVVARLKQTLSEVPV 7
E+ ++ L+P+Y D ++ + R+ + +KQ L V +
Sbjct: 428 ELSQKSNLMPIYSREHADEEIKEDRISLTEIKQGLDSVTI 467
>02_01_0326 -
2230617-2230735,2231430-2231493,2231646-2231849,
2231945-2232016,2232293-2232458,2232543-2232758,
2232873-2232949,2233056-2233151,2233237-2233280,
2233435-2233522,2233805-2233886,2233961-2234091,
2234264-2234350,2234804-2234887,2234985-2235144,
2235251-2235414,2235757-2235762,2235823-2235879,
2236159-2236278,2236387-2236496,2236587-2236689,
2236789-2236842,2237106-2237168,2237258-2237325,
2237412-2237469,2237684-2237750,2238233-2238309,
2238433-2238516,2238652-2238828,2239010-2239144
Length = 1010
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 138 AGSYEVCERRVLIPVYGVHEVDRDVAQLRVVVARLKQTLSEV 13
A Y CE + +P Y RDV + +VV RL ++ SEV
Sbjct: 182 AEDYSHCEFLLRLPGYCPMPAFRDVIDVPLVVRRLHKSRSEV 223
>11_02_0032 +
7564153-7564719,7564844-7565128,7565207-7565524,
7565612-7565839,7566662-7566762,7566852-7566933,
7567230-7567364,7567460-7567516,7568030-7568167
Length = 636
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 386 QSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHH 288
QS+ + + I+ D E +H ++LSAHH
Sbjct: 88 QSKENGRNSNNILEDGEKSVLSSDHSKKLSAHH 120
>06_01_0292 + 2136637-2137050,2137162-2137671
Length = 307
Score = 27.1 bits (57), Expect = 8.4
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 215 SWTDSGXPECLPXNPVLASRXPIRGDVRTDGAGAHLH---DIGVRRQE*WEHRLRYHADF 385
S T + P +P A+ I GDVR D A AH +GV +E ++ R D
Sbjct: 20 STTTTSSPGAGSSSPWAAALNSIVGDVRRDQAAAHAAAAVGVGVGGEEMYQGRASTSPDS 79
Query: 386 AA 391
AA
Sbjct: 80 AA 81
>03_04_0147 +
17690840-17691687,17692328-17692532,17693048-17693199,
17693306-17693597,17693807-17693962,17694561-17694764,
17694875-17694987,17695078-17695192,17695293-17695382,
17695463-17695666,17695764-17695859,17696094-17696216,
17696308-17696400,17696477-17696641,17697179-17697268,
17697356-17697520
Length = 1036
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 34 ETCDYNPKLGDIPIDFMDPI 93
E D LGDIP +F+DPI
Sbjct: 932 EAMDAEAMLGDIPDEFLDPI 951
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,863,274
Number of Sequences: 37544
Number of extensions: 290576
Number of successful extensions: 969
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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