Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0819
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.014
SB_643| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   0.92 
SB_57776| Best HMM Match : EB (HMM E-Value=2.9)                        30   1.2  
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_7148| Best HMM Match : MoCF_biosynth (HMM E-Value=3.6e-26)          29   2.1  
SB_19803| Best HMM Match : Baculo_11_kDa (HMM E-Value=9.4)             29   2.8  
SB_36189| Best HMM Match : ANATO (HMM E-Value=2.9)                     28   3.7  
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               28   3.7  
SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)                     28   4.9  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)                   27   6.5  
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)               27   6.5  
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    27   6.5  
SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)                       27   6.5  
SB_25730| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        27   8.6  
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                27   8.6  

>SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 654

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -3

Query: 422 HEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHEL-VXDLXEQDXPG 246
           H P   +    + S  D  DD PI  D E    EDE +    A+HHE  +  L +Q    
Sbjct: 28  HGPAGRSLSRKETSGKDGGDDTPIEDDIEEEEIEDEDEGSAKANHHESGLSHLKQQKTKE 87

Query: 245 DTP 237
           +TP
Sbjct: 88  ETP 90


>SB_643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 4/137 (2%)
 Frame = -3

Query: 422 HEPEAHAAQTLQQSQHDNEDDV-PIILDAEHRYHEDEHQRRLSAHHHELVXDLXEQDXPG 246
           ++   +  +  Q S    +DD  P+ +  E        QR+L A H +L          G
Sbjct: 224 YKDRVYRGEKKQDSSLSPQDDTQPVGISLERDVTLPNLQRQLEAAHEQLALLRF-----G 278

Query: 245 DTPATQNRSRXPSIRSTINADDVRATARKNTMVN--MTPGATKSVNEGFLFPYMGSMKSI 72
                      P++ STI    +  + + N       TP      + G   P  G+M S+
Sbjct: 279 LKKKESETFEAPALISTITKPSMSTSVQGNMYSPGMSTPVQANITSPGMSTPVQGNMTSL 338

Query: 71  GMS-PSFGL*SHVSSRP 24
           GMS P  G  S V S P
Sbjct: 339 GMSTPVQGAESKVKSPP 355


>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
          Length = 669

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 347 LDAEHRYHEDEHQRRLSAHHHELVXDLXE 261
           LD + ++H+D HQ +     HE+  DL E
Sbjct: 58  LDVDRKFHDDSHQLKYFCPPHEIHFDLSE 86


>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
 Frame = -3

Query: 329 YHEDEHQRRLSAHHHELVXDLXEQ---------DXPGDTPATQNRSRXPSIRSTINADDV 177
           YH+ E +++   + H L   L  +         D PG+  +T NRS    I++T    D 
Sbjct: 244 YHKKEFRKKFQGNEHYLRKHLYREASDEPENSSDHPGECNSTSNRSSAEGIKNTNKITDT 303

Query: 176 RATARKNT 153
           ++   K +
Sbjct: 304 KSMVEKES 311


>SB_7148| Best HMM Match : MoCF_biosynth (HMM E-Value=3.6e-26)
          Length = 501

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 215 SWTDSGXPECLPXNPVL 265
           SWTD G PE L  NP+L
Sbjct: 420 SWTDQGWPEYLRINPIL 436


>SB_19803| Best HMM Match : Baculo_11_kDa (HMM E-Value=9.4)
          Length = 177

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 356 PIILDAEHRYHEDEHQRRLSAHHH 285
           P  L+  H YH+ +HQ     HHH
Sbjct: 67  PNCLEMTHLYHDQQHQWNHQHHHH 90


>SB_36189| Best HMM Match : ANATO (HMM E-Value=2.9)
          Length = 199

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 466 PAGTAFRSSSQAADITNPKHMPHRXCSKV-SMITKTMFPLFLTP 338
           P   A++ SSQ    +NPK      C+   + I KT F + LTP
Sbjct: 51  PPKLAYKKSSQPESCSNPKKYEMDECALYPTCILKTAFIISLTP 94


>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 374 DNEDDVPIILDAEHRYHEDEHQRRLSAHHHE 282
           DN+ DV +  D+ H YH  +     S HHHE
Sbjct: 648 DNDGDVNVNDDSRHNYHYTQK----SKHHHE 674


>SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)
          Length = 732

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
 Frame = -3

Query: 419 EPEAHAAQTLQQSQHDNEDDVPI-ILDAEHRYHEDEHQRRLSAHHHELVXD-LXEQDXPG 246
           E E HAA   Q+ + D E D  I  L  +++Y   + +  L   H + + D L E D   
Sbjct: 365 EEEYHAALDEQREKLDKEKDAEIEKLQQKNQYELQQKKTELIEKHEKAMEDVLTELDQVQ 424

Query: 245 DTPATQNRSRXPSIRS----TINADDVRATARKNTM 150
           +    + + +  S+++    T+++ DV  +    TM
Sbjct: 425 NAELGETKRKMSSVQAKYDMTMDSLDVEVSTPHMTM 460


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 350 ILDAEHRYHEDEHQRRLSAHHHELVXDLXEQDXPGD 243
           I  AEH+  E E QR+L    H +  +  E+D   D
Sbjct: 408 IKKAEHKAVESEKQRKLENEKHSMELEAREKDLLSD 443


>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
          Length = 619

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 410 AHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHE 282
           A   Q  QQ QH ++++ P    A H+   D+H+     HHH+
Sbjct: 5   ASRRQQQQQHQHQDKNNNPPQPSAHHQCQHDKHR----DHHHD 43


>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
          Length = 358

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = -3

Query: 371 NEDDVPIILDAEHR-YHEDEHQRRLSAHHHELVXDLXEQDXPGDTPATQNRSRXPS 207
           NE D+P+     HR YH   H      HHH        Q  P  TP   +    PS
Sbjct: 120 NEADLPLDPTGNHRHYHHHYHHHH---HHHHHFVQPPYQVPPPPTPQPYHPHPYPS 172


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = -3

Query: 419  EPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHELVXDLXEQDXPGDT 240
            +PE H ++    S+ D ++      D +HR H    +++   HH     D    D P   
Sbjct: 838  KPEKHTSRPRHDSKSDKKNS-----DDKHRRHRRRREKKKQRHHSG--NDSTGSDIPASP 890

Query: 239  PATQNRSRXPS-IRSTINAD 183
                + +  PS  R  IN D
Sbjct: 891  GIANSPASRPSPSRPRINFD 910


>SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 126 RSSRRHINHRILPRRGPDIVSVDRGTDG--GXPGP 224
           +S+RR  +   L  RGP  V  DRG  G  G PGP
Sbjct: 453 QSARRGTSSATLGGRGPQGVRGDRGPPGPAGPPGP 487


>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
          Length = 1167

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +1

Query: 28   LLETCDYNPKLGDIPIDFMDPIYGNKNPSFTDFVAPGVILTIVFFLAVALTSSALI 195
            +L  C Y    GD+PI     +Y + +  +    A G++LT+  ++    TSS ++
Sbjct: 1030 ILSPCRYLNIGGDVPIGDAFKLYWHFD-RYEKNGAVGIVLTLFLYIVTLFTSSTIL 1084


>SB_25730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
 Frame = -3

Query: 419 EPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQ-RRLSAHHHELVXDLXEQDXPGD 243
           E E      LQ  Q + ED     +D      + +    RLSA HH L  +  E+   G 
Sbjct: 47  EAEKKKLTQLQLFQSELEDGKNASIDGTKELQQQKSTYARLSAQHHRLTKE-YEEAARGL 105

Query: 242 TPATQNRSRXPSIRSTINADDVRATARKNTMVNMT 138
              T ++ R P+I  T+  D  R    +   +N +
Sbjct: 106 LRRT-SKHRKPTIFGTVVGDLQRTEDDREDNINQS 139


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 389 QQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHE 282
           Q + H  +D V    D  HR  + +H+R+ + HH +
Sbjct: 646 QDADHHRQDVVHPRQDVVHRRQDADHRRQDADHHRQ 681


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 377 HDNEDDVPIILDAEHRYHEDEHQRRLSAHHH 285
           H +   + IIL   HR H + H+R    H H
Sbjct: 176 HHHPSTIIIILRHRHRQHYNRHRRHHHHHRH 206


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,475,418
Number of Sequences: 59808
Number of extensions: 305229
Number of successful extensions: 915
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)