Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0819
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28738-12|AAK68400.1|  189|Caenorhabditis elegans Sr protein (sp...    32   0.27 
Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical pr...    31   0.61 
Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical pr...    31   0.61 
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z75545-1|CAB61025.1|  665|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    27   5.7  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    27   5.7  
AB000913-1|BAA21715.1|  665|Caenorhabditis elegans UNC-14 protein.     27   5.7  
AC024772-1|AAF60536.2|  242|Caenorhabditis elegans Hypothetical ...    27   7.6  
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AC084197-15|AAN63425.1|  391|Caenorhabditis elegans Hypothetical...    27   10.0 
AC084197-14|AAM44396.1|  526|Caenorhabditis elegans Hypothetical...    27   10.0 
AC084197-13|AAM44395.1|  571|Caenorhabditis elegans Hypothetical...    27   10.0 

>U28738-12|AAK68400.1|  189|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform c protein.
          Length = 189

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 413 EAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDE 315
           E HAA T+    H   DDVP +LD  H  H+++
Sbjct: 28  ENHAAMTVMDRDH--HDDVPALLDVVHVLHQED 58


>Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 422 HEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRR 303
           H  + H AQ  Q SQ  +E+    +   EHR  E+EH RR
Sbjct: 691 HHSQQHPAQPAQPSQDHHEEHRRRL--EEHRRREEEHHRR 728


>Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 422 HEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRR 303
           H  + H AQ  Q SQ  +E+    +   EHR  E+EH RR
Sbjct: 691 HHSQQHPAQPAQPSQDHHEEHRRRL--EEHRRREEEHHRR 728


>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical protein
            F48F5.1 protein.
          Length = 1291

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = -3

Query: 398  QTLQQSQHDNED-DVPIILDAEHRYHEDEHQRRLSAHHHELVXDLXEQDXPGDTPATQNR 222
            Q  +Q++ D ++ ++   ++ E R  E E+++R++A  + L   + E+         QN+
Sbjct: 781  QRKKQAKIDRDNKEIRDEIEMEARQAE-ENEQRIAAEKNALEAKIKEKSNMRKVVDEQNQ 839

Query: 221  SRXPSIRSTINADDVRATARK 159
                 +++ + AD  ++ ARK
Sbjct: 840  REKDELQAKLRADQEKSEARK 860


>Z75545-1|CAB61025.1|  665|Caenorhabditis elegans Hypothetical
           protein K10D3.2 protein.
          Length = 665

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 349 FLTPNTDIMKMSTSAVCPHITTNWXTTCXNR 257
           F   NT ++  STS   P  +TN  + C +R
Sbjct: 285 FFKSNTQLLTSSTSKTAPQTSTNIVSNCIDR 315


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 425  IGRLRARAERSSSWPW 472
            +GRLRA    +SSWPW
Sbjct: 3893 VGRLRASPYITSSWPW 3908


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 425  IGRLRARAERSSSWPW 472
            +GRLRA    +SSWPW
Sbjct: 3893 VGRLRASPYITSSWPW 3908


>AB000913-1|BAA21715.1|  665|Caenorhabditis elegans UNC-14 protein.
          Length = 665

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 349 FLTPNTDIMKMSTSAVCPHITTNWXTTCXNR 257
           F   NT ++  STS   P  +TN  + C +R
Sbjct: 285 FFKSNTQLLTSSTSKTAPQTSTNIVSNCIDR 315


>AC024772-1|AAF60536.2|  242|Caenorhabditis elegans Hypothetical
           protein Y40C5A.1 protein.
          Length = 242

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -3

Query: 383 SQHDNEDDVPII-LDAEHRYHE----DEHQRRLSAHHHELVXDLXEQDXP 249
           S++ +E +VPII   ++H  H+    ++++R    HHH+ + +    D P
Sbjct: 116 SRNYHEVNVPIIRTPSQHSIHQSVRFNDNKRHHHHHHHDSIRNFVHHDTP 165


>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical
           protein K07G5.3 protein.
          Length = 1202

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 492 QRGVERTQGQLELRSALARR 433
           Q+ VERT+G ++L   LARR
Sbjct: 151 QKAVERTRGNVQLNRRLARR 170


>AC084197-15|AAN63425.1|  391|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5c protein.
          Length = 391

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 419 EPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHE 282
           EPE    +T +    D +       ++ HR  ED+  RR S+ HH+
Sbjct: 201 EPEKKKPRTSENDDKDKKHHGSSSSNS-HRRREDDKDRRQSSDHHK 245


>AC084197-14|AAM44396.1|  526|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5b protein.
          Length = 526

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 419 EPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHE 282
           EPE    +T +    D +       ++ HR  ED+  RR S+ HH+
Sbjct: 336 EPEKKKPRTSENDDKDKKHHGSSSSNS-HRRREDDKDRRQSSDHHK 380


>AC084197-13|AAM44395.1|  571|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5a protein.
          Length = 571

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 419 EPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHHE 282
           EPE    +T +    D +       ++ HR  ED+  RR S+ HH+
Sbjct: 381 EPEKKKPRTSENDDKDKKHHGSSSSNS-HRRREDDKDRRQSSDHHK 425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,063,952
Number of Sequences: 27780
Number of extensions: 226736
Number of successful extensions: 774
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)