Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0819
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa...    33   0.14 
At5g08580.1 68418.m01021 calcium-binding EF hand family protein ...    31   0.33 
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct...    31   0.57 
At5g46780.2 68418.m05763 VQ motif-containing protein contains PF...    29   1.3  
At5g46780.1 68418.m05762 VQ motif-containing protein contains PF...    29   1.3  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    29   1.3  
At1g09130.1 68414.m01017 ATP-dependent Clp protease proteolytic ...    29   1.3  
At1g55740.1 68414.m06382 alkaline alpha galactosidase, putative ...    28   3.0  
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ...    27   5.3  
At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family pr...    27   5.3  
At5g47800.1 68418.m05904 phototropic-responsive NPH3 family prot...    27   5.3  
At3g56130.1 68416.m06238 biotin/lipoyl attachment domain-contain...    27   5.3  
At5g44050.1 68418.m05390 MATE efflux family protein similar to r...    27   7.0  
At1g49850.1 68414.m05589 zinc finger (C3HC4-type RING finger) fa...    27   9.3  

>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 496

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
 Frame = -3

Query: 335 HRYHEDEHQRRLSAHHHELVXDLXEQDXPGDTPAT-QNRSRXPSIRSTINADDVRATARK 159
           H +H   H      HHH L   +  +  P  +PA  ++R R PS     N  +      K
Sbjct: 339 HHHHHHHHHNHHHHHHHNLSPKMAPEVSPVASPAPHRSRKRAPSAPPPCNPGNRVHFKEK 398

Query: 158 NTMVNMTPGATKS 120
               + TP    S
Sbjct: 399 RVQFSSTPAPAPS 411


>At5g08580.1 68418.m01021 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 391

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = -3

Query: 428 RYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHH-ELVXDLXEQDX 252
           ++H  +  ++   + ++HD     P++ D E R  + E +R+   H H ELV    ++  
Sbjct: 39  QHHRLKLRSSFNFKPTRHDPVPFDPLVADMERRREDKEWERQYIEHSHPELVSHSQKETT 98

Query: 251 PGDTPATQNRSRXPSIRSTINADD 180
            G           P     ++A+D
Sbjct: 99  GGGHEHAPGHESQPEWEEFMDAED 122


>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
           RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
           PIR2:A28490
          Length = 725

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -3

Query: 413 EAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRL 300
           E    + LQ+ + +N+D VP++ + +   H DE + ++
Sbjct: 68  EVKEEEQLQEPKEENQDSVPLVEEVQDPIHADESENKI 105


>At5g46780.2 68418.m05763 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 237

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -3

Query: 347 LDAEHRYHEDEHQRRLSAHHHELVXDLXEQDXPGDTPATQNRSRXP-SIRSTINADDVRA 171
           +D +     D H      HHH L  +   ++   D P  QN+ + P ++   IN  D R+
Sbjct: 1   MDDQSNRGNDNHNN--DHHHHHLGVNKMGKNIRKDPPNQQNQQQNPQALVYNINKTDFRS 58

Query: 170 TARKNTMVNMTPGATKSVN 114
             ++ T +    G+T SVN
Sbjct: 59  IVQQLTGL----GSTSSVN 73


>At5g46780.1 68418.m05762 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 237

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -3

Query: 347 LDAEHRYHEDEHQRRLSAHHHELVXDLXEQDXPGDTPATQNRSRXP-SIRSTINADDVRA 171
           +D +     D H      HHH L  +   ++   D P  QN+ + P ++   IN  D R+
Sbjct: 1   MDDQSNRGNDNHNN--DHHHHHLGVNKMGKNIRKDPPNQQNQQQNPQALVYNINKTDFRS 58

Query: 170 TARKNTMVNMTPGATKSVN 114
             ++ T +    G+T SVN
Sbjct: 59  IVQQLTGL----GSTSSVN 73


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 374 DNEDDVPIILDAEHRYHEDEHQRRLSAHHHELVXDLXEQDXPGDTPA 234
           DN+D   I L   H   E+ H+   S HHH  +      D P + P+
Sbjct: 425 DNDDTDDITLSVAHESSEEPHE--FSHHHHHEIPAKDSVDNPLNLPS 469


>At1g09130.1 68414.m01017 ATP-dependent Clp protease proteolytic
           subunit, putative similar to nClpP5 GI:5360595 from
           [Arabidopsis thaliana]
          Length = 330

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 339 GVKNNGNIVFVIMLTLLQXLCGMCFGFVISAACELERNAVPAGPGFVLPHAAA 497
           G+++ G  ++  ++ L   +  +C G  I  AC L  +A   G  F++PHA A
Sbjct: 180 GMESEGFAIYDSLMQLKNEVHTVCVGAAIGQAC-LLLSAGTKGKRFMMPHAKA 231


>At1g55740.1 68414.m06382 alkaline alpha galactosidase, putative
           similar to alkaline alpha galactosidase I [Cucumis melo]
           GI:29838629; contains Pfam profile PF05691: Raffinose
           synthase or seed imbibition protein Sip1
          Length = 754

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 487 WGRTNPGPAGTAFRSSSQAADITNPKHMPHRXCSKVSMITK 365
           WG   PG +G     S  A  +++P  M    C  +  ITK
Sbjct: 316 WGGVKPGVSGMEHYESKVAYPVSSPGVMSSENCGCLESITK 356


>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
           strong similarity to ubiquitin conjugating enzyme
           [Lycopersicon esculentum] GI:886679; contains Pfam
           profile PF00179: Ubiquitin-conjugating enzyme
          Length = 192

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -1

Query: 478 TNPGPAGTAFRSSSQAADITNPKHMPHRXCSKVSMITKTMFP 353
           T PGP GT +   +   DIT P   P     K+   TK   P
Sbjct: 38  TIPGPIGTPYEGGTFQIDITMPDGYPFEP-PKMQFSTKVWHP 78


>At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 498

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 20/96 (20%), Positives = 42/96 (43%)
 Frame = -3

Query: 353 IILDAEHRYHEDEHQRRLSAHHHELVXDLXEQDXPGDTPATQNRSRXPSIRSTINADDVR 174
           +I  + +R HE+  Q + S+HHH+   ++   +       + N      ++S +N+ +  
Sbjct: 389 MIPSSNNRLHEEGLQSKSSSHHHQQQLNIYNNNSQLLPNISSNNM---MLQSPMNSLETS 445

Query: 173 ATARKNTMVNMTPGATKSVNEGFLFPYMGSMKSIGM 66
             AR  T +      T S+++  +F        +GM
Sbjct: 446 TLARSFTHLPTLTQFTDSISQYQMFSEEDLQSIVGM 481


>At5g47800.1 68418.m05904 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 559

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 158 NTMVNMTPGATKSVNEGFL 102
           NT+VNM P    SV+EGFL
Sbjct: 271 NTVVNMIPADKGSVSEGFL 289


>At3g56130.1 68416.m06238 biotin/lipoyl attachment domain-containing
           protein low similarity to SP|Q06881 Biotin carboxyl
           carrier protein of acetyl-CoA carboxylase (BCCP)
           {Anabaena sp.}; contains Pfam profile PF00364:
           Biotin-requiring enzyme
          Length = 281

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 114 VHRLRSSRRHINHRILPRRGPDIVSVDRGTDGGXPGPILGXRSVSRXILFXQVVNQFV-V 290
           V R R S R+ N+R++ R      S    +DG     +   +   R I F + V   V  
Sbjct: 39  VPRWRLSNRNSNYRLVLRAKAAKSSTTTISDGSSDASVSDGKKTVRRITFPKEVEALVHE 98

Query: 291 MCGQTALVLI 320
           MC +T + ++
Sbjct: 99  MCDETEVAVL 108


>At5g44050.1 68418.m05390 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 491

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +3

Query: 219 GPILGXRSVSRXILFXQVVNQFVVMCGQTALVLIFMISVFGVKNNGNIVFVIMLTLLQXL 398
           GP +  R V+  ++F  +   F    G+  L  I +++   +  N ++ F+ M T L+ L
Sbjct: 49  GPAIFTR-VTTNLIFV-ITQAFAGHLGELELAAISIVNNVIIGFNYSL-FIGMATALETL 105

Query: 399 CGMCFG 416
           CG  FG
Sbjct: 106 CGQAFG 111


>At1g49850.1 68414.m05589 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 250

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 341 AEHRYHEDEHQRRLSAHHH 285
           + +R+H   H RR   HHH
Sbjct: 27  SSYRHHSHHHHRRHGVHHH 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,554,188
Number of Sequences: 28952
Number of extensions: 212210
Number of successful extensions: 650
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)