BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0819 (499 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 33 0.14 At5g08580.1 68418.m01021 calcium-binding EF hand family protein ... 31 0.33 At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 31 0.57 At5g46780.2 68418.m05763 VQ motif-containing protein contains PF... 29 1.3 At5g46780.1 68418.m05762 VQ motif-containing protein contains PF... 29 1.3 At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 29 1.3 At1g09130.1 68414.m01017 ATP-dependent Clp protease proteolytic ... 29 1.3 At1g55740.1 68414.m06382 alkaline alpha galactosidase, putative ... 28 3.0 At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ... 27 5.3 At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family pr... 27 5.3 At5g47800.1 68418.m05904 phototropic-responsive NPH3 family prot... 27 5.3 At3g56130.1 68416.m06238 biotin/lipoyl attachment domain-contain... 27 5.3 At5g44050.1 68418.m05390 MATE efflux family protein similar to r... 27 7.0 At1g49850.1 68414.m05589 zinc finger (C3HC4-type RING finger) fa... 27 9.3 >At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 Zinc finger, C3HC4 type (RING finger) Length = 496 Score = 32.7 bits (71), Expect = 0.14 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 1/73 (1%) Frame = -3 Query: 335 HRYHEDEHQRRLSAHHHELVXDLXEQDXPGDTPAT-QNRSRXPSIRSTINADDVRATARK 159 H +H H HHH L + + P +PA ++R R PS N + K Sbjct: 339 HHHHHHHHHNHHHHHHHNLSPKMAPEVSPVASPAPHRSRKRAPSAPPPCNPGNRVHFKEK 398 Query: 158 NTMVNMTPGATKS 120 + TP S Sbjct: 399 RVQFSSTPAPAPS 411 >At5g08580.1 68418.m01021 calcium-binding EF hand family protein contains INTERPRO:IPR002048 calcium-binding EF-hand domain Length = 391 Score = 31.5 bits (68), Expect = 0.33 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Frame = -3 Query: 428 RYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLSAHHH-ELVXDLXEQDX 252 ++H + ++ + ++HD P++ D E R + E +R+ H H ELV ++ Sbjct: 39 QHHRLKLRSSFNFKPTRHDPVPFDPLVADMERRREDKEWERQYIEHSHPELVSHSQKETT 98 Query: 251 PGDTPATQNRSRXPSIRSTINADD 180 G P ++A+D Sbjct: 99 GGGHEHAPGHESQPEWEEFMDAED 122 >At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed RNA polymerase (EC 2.7.7.6) II largestchain - mouse, PIR2:A28490 Length = 725 Score = 30.7 bits (66), Expect = 0.57 Identities = 10/38 (26%), Positives = 22/38 (57%) Frame = -3 Query: 413 EAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRL 300 E + LQ+ + +N+D VP++ + + H DE + ++ Sbjct: 68 EVKEEEQLQEPKEENQDSVPLVEEVQDPIHADESENKI 105 >At5g46780.2 68418.m05763 VQ motif-containing protein contains PF05678: VQ motif Length = 237 Score = 29.5 bits (63), Expect = 1.3 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Frame = -3 Query: 347 LDAEHRYHEDEHQRRLSAHHHELVXDLXEQDXPGDTPATQNRSRXP-SIRSTINADDVRA 171 +D + D H HHH L + ++ D P QN+ + P ++ IN D R+ Sbjct: 1 MDDQSNRGNDNHNN--DHHHHHLGVNKMGKNIRKDPPNQQNQQQNPQALVYNINKTDFRS 58 Query: 170 TARKNTMVNMTPGATKSVN 114 ++ T + G+T SVN Sbjct: 59 IVQQLTGL----GSTSSVN 73 >At5g46780.1 68418.m05762 VQ motif-containing protein contains PF05678: VQ motif Length = 237 Score = 29.5 bits (63), Expect = 1.3 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Frame = -3 Query: 347 LDAEHRYHEDEHQRRLSAHHHELVXDLXEQDXPGDTPATQNRSRXP-SIRSTINADDVRA 171 +D + D H HHH L + ++ D P QN+ + P ++ IN D R+ Sbjct: 1 MDDQSNRGNDNHNN--DHHHHHLGVNKMGKNIRKDPPNQQNQQQNPQALVYNINKTDFRS 58 Query: 170 TARKNTMVNMTPGATKSVN 114 ++ T + G+T SVN Sbjct: 59 IVQQLTGL----GSTSSVN 73 >At1g31810.1 68414.m03904 formin homology 2 domain-containing protein / FH2 domain-containing protein low similarity to SP|P48608 Diaphanous protein {Drosophila melanogaster}; contains Pfam profile PF02181: Formin Homology 2(FH2) Domain Length = 1201 Score = 29.5 bits (63), Expect = 1.3 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = -3 Query: 374 DNEDDVPIILDAEHRYHEDEHQRRLSAHHHELVXDLXEQDXPGDTPA 234 DN+D I L H E+ H+ S HHH + D P + P+ Sbjct: 425 DNDDTDDITLSVAHESSEEPHE--FSHHHHHEIPAKDSVDNPLNLPS 469 >At1g09130.1 68414.m01017 ATP-dependent Clp protease proteolytic subunit, putative similar to nClpP5 GI:5360595 from [Arabidopsis thaliana] Length = 330 Score = 29.5 bits (63), Expect = 1.3 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = +3 Query: 339 GVKNNGNIVFVIMLTLLQXLCGMCFGFVISAACELERNAVPAGPGFVLPHAAA 497 G+++ G ++ ++ L + +C G I AC L +A G F++PHA A Sbjct: 180 GMESEGFAIYDSLMQLKNEVHTVCVGAAIGQAC-LLLSAGTKGKRFMMPHAKA 231 >At1g55740.1 68414.m06382 alkaline alpha galactosidase, putative similar to alkaline alpha galactosidase I [Cucumis melo] GI:29838629; contains Pfam profile PF05691: Raffinose synthase or seed imbibition protein Sip1 Length = 754 Score = 28.3 bits (60), Expect = 3.0 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = -1 Query: 487 WGRTNPGPAGTAFRSSSQAADITNPKHMPHRXCSKVSMITK 365 WG PG +G S A +++P M C + ITK Sbjct: 316 WGGVKPGVSGMEHYESKVAYPVSSPGVMSSENCGCLESITK 356 >At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative strong similarity to ubiquitin conjugating enzyme [Lycopersicon esculentum] GI:886679; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme Length = 192 Score = 27.5 bits (58), Expect = 5.3 Identities = 15/42 (35%), Positives = 18/42 (42%) Frame = -1 Query: 478 TNPGPAGTAFRSSSQAADITNPKHMPHRXCSKVSMITKTMFP 353 T PGP GT + + DIT P P K+ TK P Sbjct: 38 TIPGPIGTPYEGGTFQIDITMPDGYPFEP-PKMQFSTKVWHP 78 >At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain Length = 498 Score = 27.5 bits (58), Expect = 5.3 Identities = 20/96 (20%), Positives = 42/96 (43%) Frame = -3 Query: 353 IILDAEHRYHEDEHQRRLSAHHHELVXDLXEQDXPGDTPATQNRSRXPSIRSTINADDVR 174 +I + +R HE+ Q + S+HHH+ ++ + + N ++S +N+ + Sbjct: 389 MIPSSNNRLHEEGLQSKSSSHHHQQQLNIYNNNSQLLPNISSNNM---MLQSPMNSLETS 445 Query: 173 ATARKNTMVNMTPGATKSVNEGFLFPYMGSMKSIGM 66 AR T + T S+++ +F +GM Sbjct: 446 TLARSFTHLPTLTQFTDSISQYQMFSEEDLQSIVGM 481 >At5g47800.1 68418.m05904 phototropic-responsive NPH3 family protein contains NPH3 family domain, Pfam:PF03000 Length = 559 Score = 27.5 bits (58), Expect = 5.3 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -3 Query: 158 NTMVNMTPGATKSVNEGFL 102 NT+VNM P SV+EGFL Sbjct: 271 NTVVNMIPADKGSVSEGFL 289 >At3g56130.1 68416.m06238 biotin/lipoyl attachment domain-containing protein low similarity to SP|Q06881 Biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.}; contains Pfam profile PF00364: Biotin-requiring enzyme Length = 281 Score = 27.5 bits (58), Expect = 5.3 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Frame = +3 Query: 114 VHRLRSSRRHINHRILPRRGPDIVSVDRGTDGGXPGPILGXRSVSRXILFXQVVNQFV-V 290 V R R S R+ N+R++ R S +DG + + R I F + V V Sbjct: 39 VPRWRLSNRNSNYRLVLRAKAAKSSTTTISDGSSDASVSDGKKTVRRITFPKEVEALVHE 98 Query: 291 MCGQTALVLI 320 MC +T + ++ Sbjct: 99 MCDETEVAVL 108 >At5g44050.1 68418.m05390 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family Length = 491 Score = 27.1 bits (57), Expect = 7.0 Identities = 19/66 (28%), Positives = 33/66 (50%) Frame = +3 Query: 219 GPILGXRSVSRXILFXQVVNQFVVMCGQTALVLIFMISVFGVKNNGNIVFVIMLTLLQXL 398 GP + R V+ ++F + F G+ L I +++ + N ++ F+ M T L+ L Sbjct: 49 GPAIFTR-VTTNLIFV-ITQAFAGHLGELELAAISIVNNVIIGFNYSL-FIGMATALETL 105 Query: 399 CGMCFG 416 CG FG Sbjct: 106 CGQAFG 111 >At1g49850.1 68414.m05589 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 250 Score = 26.6 bits (56), Expect = 9.3 Identities = 8/19 (42%), Positives = 11/19 (57%) Frame = -3 Query: 341 AEHRYHEDEHQRRLSAHHH 285 + +R+H H RR HHH Sbjct: 27 SSYRHHSHHHHRRHGVHHH 45 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,554,188 Number of Sequences: 28952 Number of extensions: 212210 Number of successful extensions: 650 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 647 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 878448512 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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