Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0818
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 250 1e-67
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 126 2e-30
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 122 4e-29
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 122 5e-29
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 1.5
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 27 1.5
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 2.0
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 2.7
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 3.5
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 6.2
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 6.2
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 8.2
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 250 bits (612), Expect = 1e-67
Identities = 113/164 (68%), Positives = 133/164 (81%)
Frame = +2
Query: 62 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 241
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GG+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 242 APRHLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 421
LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 422 RKESESCDCLQGFQLTHSLXLRHRVRYGQLLISKIREEXPDRIM 553
R+E+E+CD LQGFQLTHSL G LL+SKIREE PDR+M
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMM 164
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 126 bits (304), Expect = 2e-30
Identities = 63/161 (39%), Positives = 94/161 (58%), Gaps = 3/161 (1%)
Frame = +2
Query: 62 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGQ 235
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E G+
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 236 VRAPRHL-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 412
PR + VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V
Sbjct: 61 Y-VPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVT 119
Query: 413 DVVRKESESCDCLQGFQLTHSLXLRHRVRYGQLLISKIREE 535
D +R+ +++C LQGF + HS +G LL+ ++ E
Sbjct: 120 DKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAME 160
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 122 bits (294), Expect = 4e-29
Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 8/166 (4%)
Frame = +2
Query: 62 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASG---- 229
MRE++ + GQ G QIG WE+ EHGI P G +S++ + N Y N+ G
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVH--KNNSYLNDGFGTFFS 58
Query: 230 --GQVR-APRHL-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 397
GQ + PR + VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E+
Sbjct: 59 ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118
Query: 398 VDSVLDVVRKESESCDCLQGFQLTHSLXLRHRVRYGQLLISKIREE 535
+DSVL+ +R+ +++C LQGF + HS G LL+ ++ E
Sbjct: 119 IDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNME 164
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 122 bits (293), Expect = 5e-29
Identities = 55/165 (33%), Positives = 99/165 (60%), Gaps = 2/165 (1%)
Frame = +2
Query: 65 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVRA 244
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 245 PRHLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 418
L+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 419 VRKESESCDCLQGFQLTHSLXLRHRVRYGQLLISKIREEXPDRIM 553
+ +E++ D L+GF L HS+ G L+ ++ + P +I+
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKII 166
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 365 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 454
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 526
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +2
Query: 176 DSDLQLERINVYYNEASGGQVRAPRHLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAG 355
DS L R++ + G + PR L++ M ++R + P N++FG++ G
Sbjct: 80 DSRPSLRRVSSAPDSHKGVEAPPPRPLIN-----MSNIRKAQVKILKNPGNYIFGRTEYG 134
Query: 356 NNWAKGHYTE 385
G+ T+
Sbjct: 135 KRTYSGNSTK 144
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 101 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 202
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 296 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 397
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 45 KITYTK*GKSFIYRPANVV 101
+I+YT G SFIYRP N++
Sbjct: 64 EISYT--GTSFIYRPGNII 80
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 317 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDC 448
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 354 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 259
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 352 SAGLSEDEVVRTEDLSERSRADRVH 278
S G+S E+ R +D S+ R +RVH
Sbjct: 238 STGISGFEINRQKDTSDMKRNNRVH 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,383,149
Number of Sequences: 5004
Number of extensions: 49000
Number of successful extensions: 129
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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