Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0817
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0272 + 2016836-2017963                                          109   2e-24
08_02_1217 - 25347555-25347600,25348519-25348649,25348753-253491...    31   0.78 
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081...    29   4.2  
01_06_1527 - 38006174-38006815,38006920-38007420                       28   7.3  
12_02_1238 - 27246769-27246948,27247030-27247104,27247848-272479...    27   9.7  

>06_01_0272 + 2016836-2017963
          Length = 375

 Score =  109 bits (262), Expect = 2e-24
 Identities = 65/149 (43%), Positives = 82/149 (55%)
 Frame = +3

Query: 3   ENFVTRKITRGVAKITLGLMPYLELGNLDSKRDWGHAKDYVEAMWXMLQQDEPXDFXVAT 182
           ENFVTRKITR V +I +GL   + LGNL + RDWG A DYVEAMW MLQQD+P D+ VAT
Sbjct: 224 ENFVTRKITRAVGRIKVGLQTKVFLGNLSAARDWGFAGDYVEAMWRMLQQDKPGDYVVAT 283

Query: 183 GETHXVRXFXXKSFXCXGRXXAWRAPACTRPDTTRTRNNYSSKSTLSISAPTKWTYY*AI 362
            E+H V  F   +F   G    W+       D       Y          P +       
Sbjct: 284 EESHTVEEFLQAAFGYAG--LNWK-------DHVVIDKKY--------FRPAEVDSLQGD 326

Query: 363 QAKAKQKLGWGPKVSFDQLVKDMVEADLD 449
             KA+++LGW PKV F QLV+ MV+ D++
Sbjct: 327 ATKARKELGWKPKVGFQQLVEMMVDNDIE 355



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 305 VKVNPKYFRPNEVDLLLGDPSKGETEVRMGPQ 400
           V ++ KYFRP EVD L GD +K   E+   P+
Sbjct: 308 VVIDKKYFRPAEVDSLQGDATKARKELGWKPK 339


>08_02_1217 -
           25347555-25347600,25348519-25348649,25348753-25349190,
           25352581-25352674,25352794-25352891
          Length = 268

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 448 IDEKDTRSVESIYLRKPLHYEISIYCGRATAIVXHLRQIRV 570
           +DE D R   ++YL+KPL++    +    T +   L Q++V
Sbjct: 199 LDETDMRGEGTMYLQKPLYFRTEAWVVEMTTLQGQLWQVKV 239


>01_06_0556 +
           30207124-30207581,30207692-30207901,30208016-30208100,
           30208517-30208676,30208768-30208844,30208985-30209032,
           30209504-30209594,30209703-30210004,30210214-30210495,
           30210695-30211011,30211113-30211273,30211556-30211665,
           30211752-30211902,30212438-30212578,30212688-30212857,
           30213485-30213817,30213981-30214271,30214356-30214439,
           30214620-30214753,30214946-30215173,30215273-30215444,
           30215621-30215875,30215963-30216232
          Length = 1509

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 329 RPNEVDLLLGDPSKGETEVRMGPQS*LRPTSQGYG 433
           RP+ + LLLG PS G+T + +     L PT +  G
Sbjct: 220 RPSRMTLLLGPPSSGKTTLLLALAGKLDPTLETSG 254


>01_06_1527 - 38006174-38006815,38006920-38007420
          Length = 380

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
 Frame = +3

Query: 150 QDEPXDFXVATGETHX-VRXFXXKSFXCXGRXXAWRAPACTRPDTTRTRNNYSSKSTLSI 326
           Q  P  +   TG  H  V  +  K   C GR      P  T P   +    +  +  L++
Sbjct: 207 QSFPVAYGYLTGSRHSFVEVYYHKGKTCRGRYSRRMEPDITLPQWRKGSQWFELRRDLAV 266

Query: 327 SAPTKWTYY 353
           +A T   YY
Sbjct: 267 AALTDARYY 275


>12_02_1238 -
           27246769-27246948,27247030-27247104,27247848-27247959,
           27248213-27248295,27248544-27248791,27249448-27249533,
           27250131-27250210,27250310-27250480,27250998-27251099,
           27251591-27251743,27252459-27252575,27252715-27252804,
           27253057-27253196,27253339-27253396,27253931-27254010,
           27254215-27254349,27254482-27254646,27254982-27255021
          Length = 704

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 478 ILRFWCLFHQSRSASTISLTSWSKLTLGPH 389
           +L+F+ L  QSR A  +SL  W +  L  H
Sbjct: 572 LLKFFILLMQSRGAVLVSLLPWLQSLLSQH 601


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,262,315
Number of Sequences: 37544
Number of extensions: 285014
Number of successful extensions: 612
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)