Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0817
(645 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81553-5|CAB04494.1| 382|Caenorhabditis elegans Hypothetical pr... 125 2e-29
AM231685-1|CAJ77754.1| 375|Caenorhabditis elegans GDP-mannose 4... 125 2e-29
Z68215-14|CAL49436.1| 394|Caenorhabditis elegans Hypothetical p... 120 7e-28
Z68215-13|CAL49435.1| 382|Caenorhabditis elegans Hypothetical p... 120 7e-28
Z68215-12|CAA92455.2| 368|Caenorhabditis elegans Hypothetical p... 120 7e-28
Z68215-10|CAC42269.1| 399|Caenorhabditis elegans Hypothetical p... 120 7e-28
Z68215-9|CAC42270.1| 384|Caenorhabditis elegans Hypothetical pr... 120 7e-28
AM231684-1|CAJ77753.1| 384|Caenorhabditis elegans GDP-mannose 4... 120 7e-28
AM231683-1|CAJ77752.1| 399|Caenorhabditis elegans GDP-mannose 4... 120 7e-28
U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z81553-5|CAB04494.1| 382|Caenorhabditis elegans Hypothetical
protein F56H6.5 protein.
Length = 382
Score = 125 bits (302), Expect = 2e-29
Identities = 65/148 (43%), Positives = 85/148 (57%)
Frame = +3
Query: 3 ENFVTRKITRGVAKITLGLMPYLELGNLDSKRDWGHAKDYVEAMWXMLQQDEPXDFXVAT 182
E FVTRKITR VAKI+L ++ELGNL + RDWGHAK+YVEAMW +LQQD P DF +AT
Sbjct: 227 ETFVTRKITRSVAKISLRQQEHIELGNLSALRDWGHAKEYVEAMWRILQQDTPDDFVIAT 286
Query: 183 GETHXVRXFXXKSFXCXGRXXAWRAPACTRPDTTRTRNNYSSKSTLSISAPTKWTYY*AI 362
G+ VR F +F G W + K + PT+
Sbjct: 287 GKQFSVREFCNLAFAEIGEQLVWEGEGVDEVGKNQD-GVVRVKVSPKYYRPTEVETLLGN 345
Query: 363 QAKAKQKLGWGPKVSFDQLVKDMVEADL 446
AKA++ LGW PK++ +LVK+MV +D+
Sbjct: 346 PAKARKTLGWEPKITVPELVKEMVASDI 373
>AM231685-1|CAJ77754.1| 375|Caenorhabditis elegans GDP-mannose
4,6-dehydratase protein.
Length = 375
Score = 125 bits (302), Expect = 2e-29
Identities = 65/148 (43%), Positives = 85/148 (57%)
Frame = +3
Query: 3 ENFVTRKITRGVAKITLGLMPYLELGNLDSKRDWGHAKDYVEAMWXMLQQDEPXDFXVAT 182
E FVTRKITR VAKI+L ++ELGNL + RDWGHAK+YVEAMW +LQQD P DF +AT
Sbjct: 220 ETFVTRKITRSVAKISLRQQEHIELGNLSALRDWGHAKEYVEAMWRILQQDTPDDFVIAT 279
Query: 183 GETHXVRXFXXKSFXCXGRXXAWRAPACTRPDTTRTRNNYSSKSTLSISAPTKWTYY*AI 362
G+ VR F +F G W + K + PT+
Sbjct: 280 GKQFSVREFCNLAFAEIGEQLVWEGEGVDEVGKNQD-GVVRVKVSPKYYRPTEVETLLGN 338
Query: 363 QAKAKQKLGWGPKVSFDQLVKDMVEADL 446
AKA++ LGW PK++ +LVK+MV +D+
Sbjct: 339 PAKARKTLGWEPKITVPELVKEMVASDI 366
>Z68215-14|CAL49436.1| 394|Caenorhabditis elegans Hypothetical
protein C53B4.7e protein.
Length = 394
Score = 120 bits (290), Expect = 7e-28
Identities = 64/148 (43%), Positives = 82/148 (55%)
Frame = +3
Query: 3 ENFVTRKITRGVAKITLGLMPYLELGNLDSKRDWGHAKDYVEAMWXMLQQDEPXDFXVAT 182
E FVTRKITR VAKI+LG +ELGNL + RDWGHA++YVEAMW +LQ D P DF +AT
Sbjct: 239 ETFVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVEAMWRILQHDSPDDFVIAT 298
Query: 183 GETHXVRXFXXKSFXCXGRXXAWRAPACTRPDTTRTRNNYSSKSTLSISAPTKWTYY*AI 362
G+ VR F +F G W + K + PT+
Sbjct: 299 GKQFSVREFCNLAFAEIGEVLQWEGEGVEEVGKNKD-GVIRVKVSPKYYRPTEVETLLGN 357
Query: 363 QAKAKQKLGWGPKVSFDQLVKDMVEADL 446
KAK+ LGW KV+ +LVK+MV +D+
Sbjct: 358 AEKAKKTLGWEAKVTVPELVKEMVASDI 385
>Z68215-13|CAL49435.1| 382|Caenorhabditis elegans Hypothetical
protein C53B4.7d protein.
Length = 382
Score = 120 bits (290), Expect = 7e-28
Identities = 64/148 (43%), Positives = 82/148 (55%)
Frame = +3
Query: 3 ENFVTRKITRGVAKITLGLMPYLELGNLDSKRDWGHAKDYVEAMWXMLQQDEPXDFXVAT 182
E FVTRKITR VAKI+LG +ELGNL + RDWGHA++YVEAMW +LQ D P DF +AT
Sbjct: 227 ETFVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVEAMWRILQHDSPDDFVIAT 286
Query: 183 GETHXVRXFXXKSFXCXGRXXAWRAPACTRPDTTRTRNNYSSKSTLSISAPTKWTYY*AI 362
G+ VR F +F G W + K + PT+
Sbjct: 287 GKQFSVREFCNLAFAEIGEVLQWEGEGVEEVGKNKD-GVIRVKVSPKYYRPTEVETLLGN 345
Query: 363 QAKAKQKLGWGPKVSFDQLVKDMVEADL 446
KAK+ LGW KV+ +LVK+MV +D+
Sbjct: 346 AEKAKKTLGWEAKVTVPELVKEMVASDI 373
>Z68215-12|CAA92455.2| 368|Caenorhabditis elegans Hypothetical
protein C53B4.7c protein.
Length = 368
Score = 120 bits (290), Expect = 7e-28
Identities = 64/148 (43%), Positives = 82/148 (55%)
Frame = +3
Query: 3 ENFVTRKITRGVAKITLGLMPYLELGNLDSKRDWGHAKDYVEAMWXMLQQDEPXDFXVAT 182
E FVTRKITR VAKI+LG +ELGNL + RDWGHA++YVEAMW +LQ D P DF +AT
Sbjct: 213 ETFVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVEAMWRILQHDSPDDFVIAT 272
Query: 183 GETHXVRXFXXKSFXCXGRXXAWRAPACTRPDTTRTRNNYSSKSTLSISAPTKWTYY*AI 362
G+ VR F +F G W + K + PT+
Sbjct: 273 GKQFSVREFCNLAFAEIGEVLQWEGEGVEEVGKNKD-GVIRVKVSPKYYRPTEVETLLGN 331
Query: 363 QAKAKQKLGWGPKVSFDQLVKDMVEADL 446
KAK+ LGW KV+ +LVK+MV +D+
Sbjct: 332 AEKAKKTLGWEAKVTVPELVKEMVASDI 359
>Z68215-10|CAC42269.1| 399|Caenorhabditis elegans Hypothetical
protein C53B4.7b protein.
Length = 399
Score = 120 bits (290), Expect = 7e-28
Identities = 64/148 (43%), Positives = 82/148 (55%)
Frame = +3
Query: 3 ENFVTRKITRGVAKITLGLMPYLELGNLDSKRDWGHAKDYVEAMWXMLQQDEPXDFXVAT 182
E FVTRKITR VAKI+LG +ELGNL + RDWGHA++YVEAMW +LQ D P DF +AT
Sbjct: 244 ETFVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVEAMWRILQHDSPDDFVIAT 303
Query: 183 GETHXVRXFXXKSFXCXGRXXAWRAPACTRPDTTRTRNNYSSKSTLSISAPTKWTYY*AI 362
G+ VR F +F G W + K + PT+
Sbjct: 304 GKQFSVREFCNLAFAEIGEVLQWEGEGVEEVGKNKD-GVIRVKVSPKYYRPTEVETLLGN 362
Query: 363 QAKAKQKLGWGPKVSFDQLVKDMVEADL 446
KAK+ LGW KV+ +LVK+MV +D+
Sbjct: 363 AEKAKKTLGWEAKVTVPELVKEMVASDI 390
>Z68215-9|CAC42270.1| 384|Caenorhabditis elegans Hypothetical
protein C53B4.7a protein.
Length = 384
Score = 120 bits (290), Expect = 7e-28
Identities = 64/148 (43%), Positives = 82/148 (55%)
Frame = +3
Query: 3 ENFVTRKITRGVAKITLGLMPYLELGNLDSKRDWGHAKDYVEAMWXMLQQDEPXDFXVAT 182
E FVTRKITR VAKI+LG +ELGNL + RDWGHA++YVEAMW +LQ D P DF +AT
Sbjct: 229 ETFVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVEAMWRILQHDSPDDFVIAT 288
Query: 183 GETHXVRXFXXKSFXCXGRXXAWRAPACTRPDTTRTRNNYSSKSTLSISAPTKWTYY*AI 362
G+ VR F +F G W + K + PT+
Sbjct: 289 GKQFSVREFCNLAFAEIGEVLQWEGEGVEEVGKNKD-GVIRVKVSPKYYRPTEVETLLGN 347
Query: 363 QAKAKQKLGWGPKVSFDQLVKDMVEADL 446
KAK+ LGW KV+ +LVK+MV +D+
Sbjct: 348 AEKAKKTLGWEAKVTVPELVKEMVASDI 375
>AM231684-1|CAJ77753.1| 384|Caenorhabditis elegans GDP-mannose
4,6-dehydratase protein.
Length = 384
Score = 120 bits (290), Expect = 7e-28
Identities = 64/148 (43%), Positives = 82/148 (55%)
Frame = +3
Query: 3 ENFVTRKITRGVAKITLGLMPYLELGNLDSKRDWGHAKDYVEAMWXMLQQDEPXDFXVAT 182
E FVTRKITR VAKI+LG +ELGNL + RDWGHA++YVEAMW +LQ D P DF +AT
Sbjct: 229 ETFVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVEAMWRILQHDSPDDFVIAT 288
Query: 183 GETHXVRXFXXKSFXCXGRXXAWRAPACTRPDTTRTRNNYSSKSTLSISAPTKWTYY*AI 362
G+ VR F +F G W + K + PT+
Sbjct: 289 GKQFSVREFCNLAFAEIGEVLQWEGEGVEEVGKNKD-GVIRVKVSPKYYRPTEVETLLGN 347
Query: 363 QAKAKQKLGWGPKVSFDQLVKDMVEADL 446
KAK+ LGW KV+ +LVK+MV +D+
Sbjct: 348 AEKAKKTLGWEAKVTVPELVKEMVASDI 375
>AM231683-1|CAJ77752.1| 399|Caenorhabditis elegans GDP-mannose
4,6-dehydratase protein.
Length = 399
Score = 120 bits (290), Expect = 7e-28
Identities = 64/148 (43%), Positives = 82/148 (55%)
Frame = +3
Query: 3 ENFVTRKITRGVAKITLGLMPYLELGNLDSKRDWGHAKDYVEAMWXMLQQDEPXDFXVAT 182
E FVTRKITR VAKI+LG +ELGNL + RDWGHA++YVEAMW +LQ D P DF +AT
Sbjct: 244 ETFVTRKITRSVAKISLGQQESIELGNLSALRDWGHAREYVEAMWRILQHDSPDDFVIAT 303
Query: 183 GETHXVRXFXXKSFXCXGRXXAWRAPACTRPDTTRTRNNYSSKSTLSISAPTKWTYY*AI 362
G+ VR F +F G W + K + PT+
Sbjct: 304 GKQFSVREFCNLAFAEIGEVLQWEGEGVEEVGKNKD-GVIRVKVSPKYYRPTEVETLLGN 362
Query: 363 QAKAKQKLGWGPKVSFDQLVKDMVEADL 446
KAK+ LGW KV+ +LVK+MV +D+
Sbjct: 363 AEKAKKTLGWEAKVTVPELVKEMVASDI 390
>U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical
protein C01F1.3a protein.
Length = 631
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 369 KAKQKLGWGPKVSFDQLVKDMVEADLD**KRHQKRRIYL 485
KAK LGW P SFD ++ V + L K H+ ++++
Sbjct: 302 KAKNDLGWEPTTSFDDGMRHTVASAL---KEHKHVKMHV 337
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,484,173
Number of Sequences: 27780
Number of extensions: 225745
Number of successful extensions: 523
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -