BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0817 (645 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g66280.1 68418.m08357 GDP-D-mannose 4,6-dehydratase, putative... 116 1e-26 At3g51160.1 68416.m05602 GDP-D-mannose-4,6-dehydratase (MUR1) al... 111 4e-25 At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa... 28 6.1 At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa... 28 6.1 At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase fam... 27 8.1 >At5g66280.1 68418.m08357 GDP-D-mannose 4,6-dehydratase, putative strong similarity to GDP-D-mannose-4,6-dehydratase [Arabidopsis thaliana] GI:1764100 Length = 361 Score = 116 bits (280), Expect = 1e-26 Identities = 69/155 (44%), Positives = 88/155 (56%) Frame = +3 Query: 3 ENFVTRKITRGVAKITLGLMPYLELGNLDSKRDWGHAKDYVEAMWXMLQQDEPXDFXVAT 182 ENFVTRKITR + +I +GL L LGN+ + RDWG A DYVEAMW MLQQ++P D+ VAT Sbjct: 210 ENFVTRKITRALGRIKVGLQTKLFLGNIQASRDWGFAGDYVEAMWLMLQQEKPDDYVVAT 269 Query: 183 GETHXVRXFXXKSFXCXGRXXAWRAPACTRPDTTRTRNNYSSKSTLSISAPTKWTYY*AI 362 E+H V+ F SF G W+ D Y PT+ Sbjct: 270 EESHTVKEFLDVSFGYVG--LNWK-------DHVEIDKRY--------FRPTEVDNLKGD 312 Query: 363 QAKAKQKLGWGPKVSFDQLVKDMVEADLD**KRHQ 467 +KAK+ LGW PKV F++LVK MV+ DL+ KR + Sbjct: 313 ASKAKEMLGWKPKVGFEKLVKMMVDEDLELAKREK 347 Score = 32.7 bits (71), Expect = 0.21 Identities = 14/32 (43%), Positives = 21/32 (65%) Frame = +2 Query: 305 VKVNPKYFRPNEVDLLLGDPSKGETEVRMGPQ 400 V+++ +YFRP EVD L GD SK + + P+ Sbjct: 294 VEIDKRYFRPTEVDNLKGDASKAKEMLGWKPK 325 >At3g51160.1 68416.m05602 GDP-D-mannose-4,6-dehydratase (MUR1) almost identical to GDP-D-mannose-4,6-dehydratase (MUR1) GI:1764100 from [Arabidopsis thaliana] Length = 373 Score = 111 bits (267), Expect = 4e-25 Identities = 68/155 (43%), Positives = 85/155 (54%) Frame = +3 Query: 3 ENFVTRKITRGVAKITLGLMPYLELGNLDSKRDWGHAKDYVEAMWXMLQQDEPXDFXVAT 182 ENFVTRKITR + +I +GL L LGNL + RDWG A DYVEAMW MLQQ++P D+ VAT Sbjct: 222 ENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVAT 281 Query: 183 GETHXVRXFXXKSFXCXGRXXAWRAPACTRPDTTRTRNNYSSKSTLSISAPTKWTYY*AI 362 E H V F SF G W+ D Y P + Sbjct: 282 EEGHTVEEFLDVSFGYLG--LNWK-------DYVEIDQRY--------FRPAEVDNLQGD 324 Query: 363 QAKAKQKLGWGPKVSFDQLVKDMVEADLD**KRHQ 467 +KAK+ LGW P+V F++LVK MV+ DL+ KR + Sbjct: 325 ASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREK 359 Score = 33.5 bits (73), Expect = 0.12 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = +2 Query: 305 VKVNPKYFRPNEVDLLLGDPSKGETEVRMGPQ 400 V+++ +YFRP EVD L GD SK + + PQ Sbjct: 306 VEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQ 337 >At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein contains Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain Length = 713 Score = 27.9 bits (59), Expect = 6.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 511 ISIYCGRATAIVXHLRQIRVTTGCHFKN 594 ISIY A+ HL Q+++ C++KN Sbjct: 81 ISIYKSLNAAVSVHLPQLQIPNDCNYKN 108 >At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein contains Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain Length = 714 Score = 27.9 bits (59), Expect = 6.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 511 ISIYCGRATAIVXHLRQIRVTTGCHFKN 594 ISIY A+ HL Q+++ C++KN Sbjct: 81 ISIYKSLNAAVSVHLPQLQIPNDCNYKN 108 >At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase family protein similar to UDP-glucuronic acid decarboxylase Uxs1p from Filobasidiella neoformans GI:14318327; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family; contains non-consensus CA donor splice site at exon 1 and TA acceptor splice site at exon 2 Length = 445 Score = 27.5 bits (58), Expect = 8.1 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 Query: 369 KAKQKLGWGPKVSFDQLVKDMVE 437 KAK+ LGW PKVS Q + MV+ Sbjct: 397 KAKELLGWEPKVSLRQGLPLMVK 419 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,014,820 Number of Sequences: 28952 Number of extensions: 218449 Number of successful extensions: 463 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 455 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 463 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1334473344 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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