Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0817
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66280.1 68418.m08357 GDP-D-mannose 4,6-dehydratase, putative...   116   1e-26
At3g51160.1 68416.m05602 GDP-D-mannose-4,6-dehydratase (MUR1) al...   111   4e-25
At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa...    28   6.1  
At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa...    28   6.1  
At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase fam...    27   8.1  

>At5g66280.1 68418.m08357 GDP-D-mannose 4,6-dehydratase, putative
           strong similarity to GDP-D-mannose-4,6-dehydratase
           [Arabidopsis thaliana] GI:1764100
          Length = 361

 Score =  116 bits (280), Expect = 1e-26
 Identities = 69/155 (44%), Positives = 88/155 (56%)
 Frame = +3

Query: 3   ENFVTRKITRGVAKITLGLMPYLELGNLDSKRDWGHAKDYVEAMWXMLQQDEPXDFXVAT 182
           ENFVTRKITR + +I +GL   L LGN+ + RDWG A DYVEAMW MLQQ++P D+ VAT
Sbjct: 210 ENFVTRKITRALGRIKVGLQTKLFLGNIQASRDWGFAGDYVEAMWLMLQQEKPDDYVVAT 269

Query: 183 GETHXVRXFXXKSFXCXGRXXAWRAPACTRPDTTRTRNNYSSKSTLSISAPTKWTYY*AI 362
            E+H V+ F   SF   G    W+       D       Y          PT+       
Sbjct: 270 EESHTVKEFLDVSFGYVG--LNWK-------DHVEIDKRY--------FRPTEVDNLKGD 312

Query: 363 QAKAKQKLGWGPKVSFDQLVKDMVEADLD**KRHQ 467
            +KAK+ LGW PKV F++LVK MV+ DL+  KR +
Sbjct: 313 ASKAKEMLGWKPKVGFEKLVKMMVDEDLELAKREK 347



 Score = 32.7 bits (71), Expect = 0.21
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 305 VKVNPKYFRPNEVDLLLGDPSKGETEVRMGPQ 400
           V+++ +YFRP EVD L GD SK +  +   P+
Sbjct: 294 VEIDKRYFRPTEVDNLKGDASKAKEMLGWKPK 325


>At3g51160.1 68416.m05602 GDP-D-mannose-4,6-dehydratase (MUR1)
           almost identical to GDP-D-mannose-4,6-dehydratase (MUR1)
           GI:1764100 from [Arabidopsis thaliana]
          Length = 373

 Score =  111 bits (267), Expect = 4e-25
 Identities = 68/155 (43%), Positives = 85/155 (54%)
 Frame = +3

Query: 3   ENFVTRKITRGVAKITLGLMPYLELGNLDSKRDWGHAKDYVEAMWXMLQQDEPXDFXVAT 182
           ENFVTRKITR + +I +GL   L LGNL + RDWG A DYVEAMW MLQQ++P D+ VAT
Sbjct: 222 ENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVAT 281

Query: 183 GETHXVRXFXXKSFXCXGRXXAWRAPACTRPDTTRTRNNYSSKSTLSISAPTKWTYY*AI 362
            E H V  F   SF   G    W+       D       Y          P +       
Sbjct: 282 EEGHTVEEFLDVSFGYLG--LNWK-------DYVEIDQRY--------FRPAEVDNLQGD 324

Query: 363 QAKAKQKLGWGPKVSFDQLVKDMVEADLD**KRHQ 467
            +KAK+ LGW P+V F++LVK MV+ DL+  KR +
Sbjct: 325 ASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREK 359



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 305 VKVNPKYFRPNEVDLLLGDPSKGETEVRMGPQ 400
           V+++ +YFRP EVD L GD SK +  +   PQ
Sbjct: 306 VEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQ 337


>At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger)
           family protein / BRCT domain-containing protein contains
           Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 713

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 511 ISIYCGRATAIVXHLRQIRVTTGCHFKN 594
           ISIY     A+  HL Q+++   C++KN
Sbjct: 81  ISIYKSLNAAVSVHLPQLQIPNDCNYKN 108


>At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger)
           family protein / BRCT domain-containing protein contains
           Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 714

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 511 ISIYCGRATAIVXHLRQIRVTTGCHFKN 594
           ISIY     A+  HL Q+++   C++KN
Sbjct: 81  ISIYKSLNAAVSVHLPQLQIPNDCNYKN 108


>At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-glucuronic acid decarboxylase
           Uxs1p from Filobasidiella neoformans GI:14318327;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family; contains non-consensus CA
           donor splice site at exon 1 and TA acceptor splice site
           at exon 2
          Length = 445

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 369 KAKQKLGWGPKVSFDQLVKDMVE 437
           KAK+ LGW PKVS  Q +  MV+
Sbjct: 397 KAKELLGWEPKVSLRQGLPLMVK 419


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,014,820
Number of Sequences: 28952
Number of extensions: 218449
Number of successful extensions: 463
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)