Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0816
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0145 - 12749288-12751510                                         28   8.3  
06_01_0525 - 3800578-3801018,3801395-3801504,3801608-3801683,380...    28   8.3  

>09_03_0145 - 12749288-12751510
          Length = 740

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
 Frame = +2

Query: 230 DGHAPAWRAFVHTNE--LQMEEAVKVFRVLYYAKDFDVFMRTACWMRERINGGMFVYAFT 403
           +G    W+ FV+  E     E A++  R L    D +       W+  R      V  F+
Sbjct: 671 EGVGEGWKGFVYALEGIYNKESALQKTRALTGHDDGNSLTNLLWWLHSRGTADDGVVGFS 730

Query: 404 AACFHRTDC 430
             C++R  C
Sbjct: 731 RCCWYRQYC 739


>06_01_0525 -
           3800578-3801018,3801395-3801504,3801608-3801683,
           3801757-3801909,3802088-3802159,3802242-3802322,
           3802936-3803001,3803117-3803182,3803277-3803327,
           3803429-3803512,3803988-3804088,3804188-3804329,
           3804820-3804917,3805194-3805263,3805409-3805477
          Length = 559

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 230 DGHAPAW--RAFVHTNELQMEEAVKVFRVLYYAKDFD 334
           D  A AW   A++ T  L +EE ++ FRVL Y  + D
Sbjct: 122 DSSAGAWDFSAWIRTYALYLEERLECFRVLKYDVETD 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,690,194
Number of Sequences: 37544
Number of extensions: 345807
Number of successful extensions: 774
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)