BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0816 (701 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_03_0145 - 12749288-12751510 28 8.3 06_01_0525 - 3800578-3801018,3801395-3801504,3801608-3801683,380... 28 8.3 >09_03_0145 - 12749288-12751510 Length = 740 Score = 27.9 bits (59), Expect = 8.3 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Frame = +2 Query: 230 DGHAPAWRAFVHTNE--LQMEEAVKVFRVLYYAKDFDVFMRTACWMRERINGGMFVYAFT 403 +G W+ FV+ E E A++ R L D + W+ R V F+ Sbjct: 671 EGVGEGWKGFVYALEGIYNKESALQKTRALTGHDDGNSLTNLLWWLHSRGTADDGVVGFS 730 Query: 404 AACFHRTDC 430 C++R C Sbjct: 731 RCCWYRQYC 739 >06_01_0525 - 3800578-3801018,3801395-3801504,3801608-3801683, 3801757-3801909,3802088-3802159,3802242-3802322, 3802936-3803001,3803117-3803182,3803277-3803327, 3803429-3803512,3803988-3804088,3804188-3804329, 3804820-3804917,3805194-3805263,3805409-3805477 Length = 559 Score = 27.9 bits (59), Expect = 8.3 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = +2 Query: 230 DGHAPAW--RAFVHTNELQMEEAVKVFRVLYYAKDFD 334 D A AW A++ T L +EE ++ FRVL Y + D Sbjct: 122 DSSAGAWDFSAWIRTYALYLEERLECFRVLKYDVETD 158 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,690,194 Number of Sequences: 37544 Number of extensions: 345807 Number of successful extensions: 774 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 760 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 774 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1803843684 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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