Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0816
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL132949-29|CAB61107.1|  209|Caenorhabditis elegans Hypothetical...    29   3.2  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    28   5.6  
AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical ...    28   7.4  
AL132949-25|CAB61103.1|  209|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 25/62 (40%), Positives = 32/62 (51%)
 Frame = -2

Query: 406 GSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHLELVGVDEGSPRGSMPIL 227
           GS +V E A+V PF +  +   E +EV   V+  ED D    L L  V E  PRG +P L
Sbjct: 137 GSNTVSEPANV-PFQNLLQPGLEGMEV---VQQEEDMDIDEELLLGPVAEEEPRGYVPPL 192

Query: 226 YI 221
            I
Sbjct: 193 VI 194


>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 352 RSPHENIEVLSVVEDSEDFD 293
           R+P+ENI++L   +DSED D
Sbjct: 581 RAPYENIDLLLSTDDSEDID 600


>AL132949-29|CAB61107.1|  209|Caenorhabditis elegans Hypothetical
           protein Y53F4B.33 protein.
          Length = 209

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = -2

Query: 448 GQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHLELV 269
           GQV  L+V   +   S ++  + + + F +  ++P E     ++V+  +DF G F   ++
Sbjct: 51  GQVPVLSVDGFDIPQSAAIIRYLA-NKFGYAGKTPEEQAWADAIVDQFKDFMGAFRQLIM 109

Query: 268 GVDEGSP 248
               G P
Sbjct: 110 AQRSGKP 116


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 25/97 (25%), Positives = 41/97 (42%)
 Frame = -2

Query: 418 VEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHLELVGVDEGSPRGS 239
           +EA   + + E A  +    P     EN E  SV  D+ DF   + +++    +  P+  
Sbjct: 80  LEADTEEDIAETADDEESKDPVEKT-ENFEP-SVTMDTYDFPDPYPVQIRARPQVPPKPP 137

Query: 238 MPILYISMNCLTTSTFMYLSQLFSMXYSLAISLMSSN 128
           +  +  SMN +  S    L +L     +L   L SSN
Sbjct: 138 IDTVRYSMNNIKESADWQLDELLEELEALETQLNSSN 174


>AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical
           protein K07D4.6 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +3

Query: 369 GSTEACSS---TLLLPRASTEPTARVSTCPLLTRSIPTSSLT 485
           G+TE  S+   T      +TEPT   ST    T ++PTS+ T
Sbjct: 257 GTTEETSTEPETTTTSTTTTEPTTTTSTTTQTTTTVPTSTST 298


>AL132949-25|CAB61103.1|  209|Caenorhabditis elegans Hypothetical
           protein Y53F4B.29 protein.
          Length = 209

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -2

Query: 448 GQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFF 284
           GQV  L+V   E   S ++  + + + F +  ++P E     ++V+  +DF G F
Sbjct: 51  GQVPVLSVDGFEIPQSAAIIRYLA-NKFGYAGKTPEEQAWADAIVDQFKDFMGSF 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,094,472
Number of Sequences: 27780
Number of extensions: 267030
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)