Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0816
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    30   1.7  
At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger) fa...    29   3.9  
At5g61420.2 68418.m07707 myb family transcription factor (MYB28)...    27   9.1  
At5g61420.1 68418.m07706 myb family transcription factor (MYB28)...    27   9.1  
At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containi...    27   9.1  

>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -2

Query: 448  GQVETLAVGSVEAR--GSKSVDEHASVDPFSHPARSPHENIEV 326
            G+ ET++ G V+A   GS  V+E  S DP S P ++P E + +
Sbjct: 2332 GRRETMSSGEVKAEEIGSDGVNE--STDPSSLPGQTPQERVRL 2372


>At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 717

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -2

Query: 487 AVNEEVGIDLVRSGQVETLAVGSVEARGSKSVDEHASVDPFS-HPARSPHENIEVLSVVE 311
           AVN   G D +R  ++  +  G  ++    + DE  +  P S     + HE+ E    VE
Sbjct: 197 AVNNNFGSDPIRRPEIREIKTG--KSLRVYNDDEPLAYSPVSLAQINTIHESDEN-DDVE 253

Query: 310 DSEDFDGFF 284
           D +DF GFF
Sbjct: 254 DDDDFPGFF 262


>At5g61420.2 68418.m07707 myb family transcription factor (MYB28)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 366

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -2

Query: 382 ASVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHLELVGVDEGSPRGSMPILYIS 218
           A  DPFS  +  P   I   S +   +D+D     E  G D  +   SM  L +S
Sbjct: 264 AEFDPFSPSSLYPEHEINATSDLNMDQDYDFSQFFEKFGGDNHNEENSMNDLLMS 318


>At5g61420.1 68418.m07706 myb family transcription factor (MYB28)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 287

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -2

Query: 382 ASVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHLELVGVDEGSPRGSMPILYIS 218
           A  DPFS  +  P   I   S +   +D+D     E  G D  +   SM  L +S
Sbjct: 185 AEFDPFSPSSLYPEHEINATSDLNMDQDYDFSQFFEKFGGDNHNEENSMNDLLMS 239


>At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 836

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 23/84 (27%), Positives = 41/84 (48%)
 Frame = -2

Query: 562 CRSISRGPGPWRL*SSSSKGFTDDMAVNEEVGIDLVRSGQVETLAVGSVEARGSKSVDEH 383
           CRSI R     ++ SS S G+T+++   +E G  ++ SG+     + SVE      +D+H
Sbjct: 77  CRSIVRRFCSEKIGSSESSGWTEEVEYLDESG-SVLHSGK----GIRSVE----PGLDDH 127

Query: 382 ASVDPFSHPARSPHENIEVLSVVE 311
             V     P  +     +++ VV+
Sbjct: 128 VMVGGLKKPYMNASSVAKIVEVVQ 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,582,437
Number of Sequences: 28952
Number of extensions: 258858
Number of successful extensions: 586
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)