BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0814 (657 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 35 0.009 SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 35 0.012 SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 31 0.19 SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 31 0.19 SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.19 SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 30 0.34 SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 29 0.45 SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.59 SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.78 SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 28 1.0 SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 28 1.4 SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4 SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 2.4 SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.4 SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 27 2.4 SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.2 SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 5.5 SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 5.5 SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 25 7.3 SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.6 >SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 653 Score = 35.1 bits (77), Expect = 0.009 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +3 Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVE 404 R FGFV +A AQ A+ + N +KGK + V A K E Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREE 344 Score = 30.7 bits (66), Expect = 0.19 Identities = 20/75 (26%), Positives = 30/75 (40%) Frame = +3 Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKD 452 + +GFV F SA AI+ NG + K + V +R V V +K+ Sbjct: 208 KGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKN 267 Query: 453 TQMEDESEEAYDNYG 497 E +E D +G Sbjct: 268 LDTEITEQEFSDLFG 282 >SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 604 Score = 34.7 bits (76), Expect = 0.012 Identities = 14/40 (35%), Positives = 25/40 (62%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 ++ FG++Q+ SA++A++K NG G+N+ V DK Sbjct: 379 SKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418 Score = 25.8 bits (54), Expect = 5.5 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +1 Query: 181 IYVGALSDNTTVEELYDYFIQYG 249 ++V L++ T ELYD+F Q G Sbjct: 242 VFVSQLANRLTSRELYDFFEQAG 264 >SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 365 Score = 30.7 bits (66), Expect = 0.19 Identities = 17/54 (31%), Positives = 26/54 (48%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVP 431 N G V+F+ E ++A+ NG V KG+ + +R D + PEVP Sbjct: 133 NPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLREDPDAANEP-----LPEVP 181 Score = 30.3 bits (65), Expect = 0.26 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +3 Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395 FGFV+ + A+D + G F G I V A +RR Sbjct: 39 FGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPARGERR 77 Score = 26.6 bits (56), Expect = 3.1 Identities = 9/27 (33%), Positives = 18/27 (66%) Frame = +1 Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258 R++VG + T E++ D+F YG+++ Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQIL 31 >SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 833 Score = 30.7 bits (66), Expect = 0.19 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +3 Query: 258 GIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 374 G ++ FGFV+F +++SA A+ NG V G + ++ Sbjct: 660 GKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIK 698 >SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces pombe|chr 1|||Manual Length = 609 Score = 30.7 bits (66), Expect = 0.19 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371 F F+ F + SA +AI NGS F+G + V Sbjct: 68 FAFITFENKCSADNAIASLNGSSFQGNTLKV 98 >SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Schizosaccharomyces pombe|chr 1|||Manual Length = 434 Score = 29.9 bits (64), Expect = 0.34 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380 ++ FG VQF E+ A +I+K NG + G+ + + A Sbjct: 319 SKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355 >SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosaccharomyces pombe|chr 2|||Manual Length = 352 Score = 29.5 bits (63), Expect = 0.45 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = +1 Query: 181 IYVGALSDNTTVEELYDYFIQYGKMM 258 +YV L +N T +EL YF+ +G+++ Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEIL 203 >SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 674 Score = 29.1 bits (62), Expect = 0.59 Identities = 20/75 (26%), Positives = 34/75 (45%) Frame = +3 Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQ 458 F FV + +A++A+ NG+ G+ I V A K + A LKD Sbjct: 150 FAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK-----------DAFEATTLKDAS 198 Query: 459 MEDESEEAYDNYGNN 503 E+E++E + G++ Sbjct: 199 SEEENKEFVSDEGHS 213 >SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 474 Score = 28.7 bits (61), Expect = 0.78 Identities = 10/27 (37%), Positives = 20/27 (74%) Frame = +1 Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258 ++++G L+ TT + L DYF Q+G+++ Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVL 190 Score = 26.2 bits (55), Expect = 4.2 Identities = 11/35 (31%), Positives = 24/35 (68%) Frame = +1 Query: 154 KQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKMM 258 +Q+ TA +++VG + + T EE ++F Q+G+++ Sbjct: 242 EQEKTA--KMFVGGVPGDCTEEEFRNFFNQFGRVL 274 >SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 348 Score = 28.3 bits (60), Expect = 1.0 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Frame = +3 Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT---DKRRD 398 R FGFV FA AI++ NG + V++A DK+ D Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQND 302 >SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Manual Length = 629 Score = 27.9 bits (59), Expect = 1.4 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 Query: 398 ISSFISCGSDRDIFSFEYATISFFYC 321 IS FI G DIF++EY F +C Sbjct: 50 ISPFIGDGRGSDIFNYEYYDERFHFC 75 >SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 738 Score = 27.1 bits (57), Expect = 2.4 Identities = 10/35 (28%), Positives = 18/35 (51%) Frame = +3 Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365 I++ N+GFVQF A+ G+ +G+ + Sbjct: 393 IVLKANYGFVQFFTNEDCARALNAEQGNFVRGQKL 427 >SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|Schizosaccharomyces pombe|chr 2|||Manual Length = 784 Score = 27.1 bits (57), Expect = 2.4 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%) Frame = +3 Query: 342 SVFKGKNIPVRAATDKRRDVETVTIYPEVP-----PAVALKDTQMEDESEEAYDNYGNNN 506 S FK ++ P +AA ++ ++ + EVP P V +K+ + + E++ D + NN Sbjct: 652 SRFKARS-PSKAARVLKKPLKKRVRFSEVPTTSSVPPVEIKNKDSKPKVEKSLDKHNMNN 710 Query: 507 DMVF 518 D F Sbjct: 711 DRSF 714 >SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 219 Score = 27.1 bits (57), Expect = 2.4 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +1 Query: 172 HLRIYVGALSDNTTVEELYDYFIQYGKMM 258 H R++VG L ++ E LY F +Y ++ Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLV 57 Score = 26.6 bits (56), Expect = 3.1 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Frame = +3 Query: 243 IRENDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATD--KRRDVETVTI 416 +R+ +G R FGFV F + A ++ NG + + + AT K +V TI Sbjct: 62 VRDREG--KTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTI 119 >SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosaccharomyces pombe|chr 3|||Manual Length = 877 Score = 27.1 bits (57), Expect = 2.4 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = -3 Query: 370 TGIFFPLNTLPLAFFIASCALDSSANCTNPKFLLTIIPSFSRIV*SNH 227 +G F P T F S ++N NP L + IPS SR SNH Sbjct: 219 SGSFSPFATSSPNFLSTSTPAPPNSNNANPSTLFSSIPS-SRHTTSNH 265 >SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 243 Score = 26.2 bits (55), Expect = 4.2 Identities = 10/36 (27%), Positives = 24/36 (66%) Frame = -3 Query: 115 LFIYYNCIFVKL*ANSDFFAVTKILFNVNIKCTYVH 8 +F ++ +F+K +NS+ ++ K+L ++NI+ +H Sbjct: 183 VFSFFQSLFLKEISNSNNISLAKMLTHLNIRAFCLH 218 >SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 529 Score = 25.8 bits (54), Expect = 5.5 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +1 Query: 169 AHLRIYVGALSDNTTVEELYDYFIQYGKM 255 A IY+G D+ T+E L + F ++G++ Sbjct: 412 ASRNIYIGNADDSLTIERLKEDFEEFGEI 440 >SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schizosaccharomyces pombe|chr 1|||Manual Length = 859 Score = 25.8 bits (54), Expect = 5.5 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Frame = -3 Query: 628 DRAPRT--PLPRGPKPTATASTSLIMNFWP 545 D++P T PLP P P T+ +L+ N +P Sbjct: 727 DKSPVTTPPLPTAPAPVITSRHALVNNQFP 756 >SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schizosaccharomyces pombe|chr 2|||Manual Length = 137 Score = 25.4 bits (53), Expect = 7.3 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +1 Query: 181 IYVGALSDNTTVEELYDYFIQYG 249 +++ LS T EE+YD F +YG Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYG 36 >SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 780 Score = 25.0 bits (52), Expect = 9.6 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = +3 Query: 21 HFIFTLNNIFVTAKKSEFAYNFTKIQ 98 H F+ NN+ ++ ++ +FTKIQ Sbjct: 253 HPFFSQNNVSLSTNSKNYSTDFTKIQ 278 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,620,461 Number of Sequences: 5004 Number of extensions: 52963 Number of successful extensions: 183 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 182 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 297805304 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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