Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0814
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 35 0.009
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 35 0.012
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 31 0.19
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 31 0.19
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.19
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 30 0.34
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 29 0.45
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.59
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.78
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 28 1.0
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 28 1.4
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 2.4
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.4
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 27 2.4
SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.2
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 5.5
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 5.5
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 25 7.3
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.6
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 35.1 bits (77), Expect = 0.009
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVE 404
R FGFV +A AQ A+ + N +KGK + V A K E
Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREE 344
Score = 30.7 bits (66), Expect = 0.19
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKD 452
+ +GFV F SA AI+ NG + K + V +R V V +K+
Sbjct: 208 KGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKN 267
Query: 453 TQMEDESEEAYDNYG 497
E +E D +G
Sbjct: 268 LDTEITEQEFSDLFG 282
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.7 bits (76), Expect = 0.012
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
++ FG++Q+ SA++A++K NG G+N+ V DK
Sbjct: 379 SKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 181 IYVGALSDNTTVEELYDYFIQYG 249
++V L++ T ELYD+F Q G
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAG 264
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVP 431
N G V+F+ E ++A+ NG V KG+ + +R D + PEVP
Sbjct: 133 NPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLREDPDAANEP-----LPEVP 181
Score = 30.3 bits (65), Expect = 0.26
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
FGFV+ + A+D + G F G I V A +RR
Sbjct: 39 FGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPARGERR 77
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
R++VG + T E++ D+F YG+++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQIL 31
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 258 GIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 374
G ++ FGFV+F +++SA A+ NG V G + ++
Sbjct: 660 GKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIK 698
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
F F+ F + SA +AI NGS F+G + V
Sbjct: 68 FAFITFENKCSADNAIASLNGSSFQGNTLKV 98
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.9 bits (64), Expect = 0.34
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
++ FG VQF E+ A +I+K NG + G+ + + A
Sbjct: 319 SKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 29.5 bits (63), Expect = 0.45
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 181 IYVGALSDNTTVEELYDYFIQYGKMM 258
+YV L +N T +EL YF+ +G+++
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEIL 203
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 29.1 bits (62), Expect = 0.59
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQ 458
F FV + +A++A+ NG+ G+ I V A K + A LKD
Sbjct: 150 FAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK-----------DAFEATTLKDAS 198
Query: 459 MEDESEEAYDNYGNN 503
E+E++E + G++
Sbjct: 199 SEEENKEFVSDEGHS 213
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 0.78
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
++++G L+ TT + L DYF Q+G+++
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVL 190
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +1
Query: 154 KQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKMM 258
+Q+ TA +++VG + + T EE ++F Q+G+++
Sbjct: 242 EQEKTA--KMFVGGVPGDCTEEEFRNFFNQFGRVL 274
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT---DKRRD 398
R FGFV FA AI++ NG + V++A DK+ D
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQND 302
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 398 ISSFISCGSDRDIFSFEYATISFFYC 321
IS FI G DIF++EY F +C
Sbjct: 50 ISPFIGDGRGSDIFNYEYYDERFHFC 75
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365
I++ N+GFVQF A+ G+ +G+ +
Sbjct: 393 IVLKANYGFVQFFTNEDCARALNAEQGNFVRGQKL 427
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +3
Query: 342 SVFKGKNIPVRAATDKRRDVETVTIYPEVP-----PAVALKDTQMEDESEEAYDNYGNNN 506
S FK ++ P +AA ++ ++ + EVP P V +K+ + + E++ D + NN
Sbjct: 652 SRFKARS-PSKAARVLKKPLKKRVRFSEVPTTSSVPPVEIKNKDSKPKVEKSLDKHNMNN 710
Query: 507 DMVF 518
D F
Sbjct: 711 DRSF 714
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 172 HLRIYVGALSDNTTVEELYDYFIQYGKMM 258
H R++VG L ++ E LY F +Y ++
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLV 57
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 243 IRENDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATD--KRRDVETVTI 416
+R+ +G R FGFV F + A ++ NG + + + AT K +V TI
Sbjct: 62 VRDREG--KTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTI 119
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -3
Query: 370 TGIFFPLNTLPLAFFIASCALDSSANCTNPKFLLTIIPSFSRIV*SNH 227
+G F P T F S ++N NP L + IPS SR SNH
Sbjct: 219 SGSFSPFATSSPNFLSTSTPAPPNSNNANPSTLFSSIPS-SRHTTSNH 265
>SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 243
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = -3
Query: 115 LFIYYNCIFVKL*ANSDFFAVTKILFNVNIKCTYVH 8
+F ++ +F+K +NS+ ++ K+L ++NI+ +H
Sbjct: 183 VFSFFQSLFLKEISNSNNISLAKMLTHLNIRAFCLH 218
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 169 AHLRIYVGALSDNTTVEELYDYFIQYGKM 255
A IY+G D+ T+E L + F ++G++
Sbjct: 412 ASRNIYIGNADDSLTIERLKEDFEEFGEI 440
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -3
Query: 628 DRAPRT--PLPRGPKPTATASTSLIMNFWP 545
D++P T PLP P P T+ +L+ N +P
Sbjct: 727 DKSPVTTPPLPTAPAPVITSRHALVNNQFP 756
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 181 IYVGALSDNTTVEELYDYFIQYG 249
+++ LS T EE+YD F +YG
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYG 36
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 21 HFIFTLNNIFVTAKKSEFAYNFTKIQ 98
H F+ NN+ ++ ++ +FTKIQ
Sbjct: 253 HPFFSQNNVSLSTNSKNYSTDFTKIQ 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,461
Number of Sequences: 5004
Number of extensions: 52963
Number of successful extensions: 183
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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