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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0814
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    35   0.009
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    35   0.012
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    31   0.19 
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    31   0.19 
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    31   0.19 
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    30   0.34 
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    29   0.45 
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.59 
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    29   0.78 
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    28   1.0  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    28   1.4  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   2.4  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    27   2.4  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   2.4  
SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.2  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   5.5  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   5.5  
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi...    25   7.3  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.6  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVE 404
           R FGFV +A    AQ A+ + N   +KGK + V  A  K    E
Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREE 344



 Score = 30.7 bits (66), Expect = 0.19
 Identities = 20/75 (26%), Positives = 30/75 (40%)
 Frame = +3

Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKD 452
           + +GFV F    SA  AI+  NG +   K + V     +R     V         V +K+
Sbjct: 208 KGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKN 267

Query: 453 TQMEDESEEAYDNYG 497
              E   +E  D +G
Sbjct: 268 LDTEITEQEFSDLFG 282


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           ++ FG++Q+    SA++A++K NG    G+N+ V    DK
Sbjct: 379 SKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418



 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 181 IYVGALSDNTTVEELYDYFIQYG 249
           ++V  L++  T  ELYD+F Q G
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAG 264


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVP 431
           N   G V+F+ E   ++A+   NG V KG+ + +R   D   +       PEVP
Sbjct: 133 NPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLREDPDAANEP-----LPEVP 181



 Score = 30.3 bits (65), Expect = 0.26
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
           FGFV+  +   A+D +    G  F G  I V  A  +RR
Sbjct: 39  FGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPARGERR 77



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
           R++VG +    T E++ D+F  YG+++
Sbjct: 5   RLFVGRIPPQATREDMMDFFKGYGQIL 31


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 258 GIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 374
           G  ++  FGFV+F +++SA  A+   NG V  G  + ++
Sbjct: 660 GKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIK 698


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
           F F+ F  + SA +AI   NGS F+G  + V
Sbjct: 68  FAFITFENKCSADNAIASLNGSSFQGNTLKV 98


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
           ++ FG VQF  E+ A  +I+K NG  + G+ + +  A
Sbjct: 319 SKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 181 IYVGALSDNTTVEELYDYFIQYGKMM 258
           +YV  L +N T +EL  YF+ +G+++
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEIL 203


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +3

Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQ 458
           F FV   +  +A++A+   NG+   G+ I V  A  K           +   A  LKD  
Sbjct: 150 FAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK-----------DAFEATTLKDAS 198

Query: 459 MEDESEEAYDNYGNN 503
            E+E++E   + G++
Sbjct: 199 SEEENKEFVSDEGHS 213


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +1

Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
           ++++G L+  TT + L DYF Q+G+++
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVL 190



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +1

Query: 154 KQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKMM 258
           +Q+ TA  +++VG +  + T EE  ++F Q+G+++
Sbjct: 242 EQEKTA--KMFVGGVPGDCTEEEFRNFFNQFGRVL 274


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT---DKRRD 398
           R FGFV FA       AI++ NG       + V++A    DK+ D
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQND 302


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 398 ISSFISCGSDRDIFSFEYATISFFYC 321
           IS FI  G   DIF++EY    F +C
Sbjct: 50  ISPFIGDGRGSDIFNYEYYDERFHFC 75


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365
           I++  N+GFVQF        A+    G+  +G+ +
Sbjct: 393 IVLKANYGFVQFFTNEDCARALNAEQGNFVRGQKL 427


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = +3

Query: 342 SVFKGKNIPVRAATDKRRDVETVTIYPEVP-----PAVALKDTQMEDESEEAYDNYGNNN 506
           S FK ++ P +AA   ++ ++    + EVP     P V +K+   + + E++ D +  NN
Sbjct: 652 SRFKARS-PSKAARVLKKPLKKRVRFSEVPTTSSVPPVEIKNKDSKPKVEKSLDKHNMNN 710

Query: 507 DMVF 518
           D  F
Sbjct: 711 DRSF 714


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 172 HLRIYVGALSDNTTVEELYDYFIQYGKMM 258
           H R++VG L ++   E LY  F +Y  ++
Sbjct: 29  HFRLFVGNLGNDVNDESLYQAFSEYPSLV 57



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 243 IRENDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATD--KRRDVETVTI 416
           +R+ +G    R FGFV F +      A ++ NG     + + +  AT   K  +V   TI
Sbjct: 62  VRDREG--KTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTI 119


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -3

Query: 370 TGIFFPLNTLPLAFFIASCALDSSANCTNPKFLLTIIPSFSRIV*SNH 227
           +G F P  T    F   S     ++N  NP  L + IPS SR   SNH
Sbjct: 219 SGSFSPFATSSPNFLSTSTPAPPNSNNANPSTLFSSIPS-SRHTTSNH 265


>SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = -3

Query: 115 LFIYYNCIFVKL*ANSDFFAVTKILFNVNIKCTYVH 8
           +F ++  +F+K  +NS+  ++ K+L ++NI+   +H
Sbjct: 183 VFSFFQSLFLKEISNSNNISLAKMLTHLNIRAFCLH 218


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 169 AHLRIYVGALSDNTTVEELYDYFIQYGKM 255
           A   IY+G   D+ T+E L + F ++G++
Sbjct: 412 ASRNIYIGNADDSLTIERLKEDFEEFGEI 440


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 628 DRAPRT--PLPRGPKPTATASTSLIMNFWP 545
           D++P T  PLP  P P  T+  +L+ N +P
Sbjct: 727 DKSPVTTPPLPTAPAPVITSRHALVNNQFP 756


>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 137

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 181 IYVGALSDNTTVEELYDYFIQYG 249
           +++  LS   T EE+YD F +YG
Sbjct: 14  LFIKNLSFKITAEEMYDLFGRYG 36


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 21  HFIFTLNNIFVTAKKSEFAYNFTKIQ 98
           H  F+ NN+ ++     ++ +FTKIQ
Sbjct: 253 HPFFSQNNVSLSTNSKNYSTDFTKIQ 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,461
Number of Sequences: 5004
Number of extensions: 52963
Number of successful extensions: 183
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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