Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0814
(657 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 44 8e-05
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 37 0.013
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 34 0.089
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 33 0.15
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 33 0.20
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.36
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 32 0.47
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.47
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.47
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 31 1.1
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 30 1.4
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 29 2.5
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 29 2.5
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 29 4.4
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 29 4.4
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 29 4.4
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 28 5.8
SB_33542| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0) 28 5.8
SB_23441| Best HMM Match : IncA (HMM E-Value=2.5) 28 5.8
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099) 28 7.7
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 28 7.7
SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07) 28 7.7
SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5) 28 7.7
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = +3
Query: 258 GIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETV 410
G ++ NFGFVQF E A +A+ K +G + GK I VR + R DV V
Sbjct: 75 GCSLHANFGFVQFETEKGADEAVAKEHGRIINGKKIDVR-IVNSRADVNLV 124
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRD 398
+R FGFV FA AQ A+K NG +G+ + + + + RD
Sbjct: 98 SRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIAPSISRGRD 140
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRA 377
+RNFG+V F +E A DA+K+ G KGK I RA
Sbjct: 16 SRNFGYVTFRDEQDAADAMKQMGGESGKGKEIFGRA 51
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 127 NLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKM 255
N +D K+ T +I++G LS NT+ E++ YF Q+GK+
Sbjct: 167 NSGAQELDGKKMVTTTKKIFIGGLSTNTSEEDMKKYFSQFGKV 209
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 34.3 bits (75), Expect = 0.089
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMMGL 264
+++VG LS TT E L +YF +YG+++G+
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGV 58
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
I + N+GFV+F ++ A DA+ + NG G+ I V
Sbjct: 32 INLKNNYGFVEFEDDRDADDAVYECNGKEMLGERILV 68
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRD 398
I + R +GFV+F + A+DA+ NG G+ + V + +R +
Sbjct: 718 ISLKRGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFSKGRRSE 763
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
R F FV F + + +DAI + +G F G+++ V A + +
Sbjct: 270 RGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQARSREQ 310
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
+R FGFV AI+K N S G+NI V A DK
Sbjct: 48 SRGFGFVLLQSADQIAPAIEKMNQSSVGGRNITVALALDK 87
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
+I++G L+ NTT E L DYF Q+G ++
Sbjct: 51 KIFIGGLNWNTTEEGLKDYFSQWGTIV 77
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
++ +GFVQF E +A+ A+++ NG G+ + + T++
Sbjct: 282 SKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKIGPVTER 321
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 31.9 bits (69), Expect = 0.47
Identities = 20/77 (25%), Positives = 32/77 (41%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQ 458
FGFVQF A A+++ N G+ + V A K E + + + L+D +
Sbjct: 292 FGFVQFTNVFDAAKALEEMNAKKILGRPVAVDWAVPKSMYTENQEKHKKDYNSNTLQDDE 351
Query: 459 MEDESEEAYDNYGNNND 509
E E + N +D
Sbjct: 352 KGGEDSEGTTEHKNRDD 368
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPP 434
+ +G+V++ +ESSA A+ + + KG+ I V + R +P PP
Sbjct: 211 KGYGYVEYEQESSASTAVLTLDKTEVKGRTISVALSNPPTRRGPPRQEHPPPPP 264
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
R++GFV FA+ SA AI NG+ G + V A
Sbjct: 35 RDYGFVYFAKRESAVQAIDGINGAYIDGCKLEVSLA 70
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 154 KQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKM 255
K++ +++VG L ++TT + L +YF Q+G++
Sbjct: 192 KEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEV 225
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 130 LTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYG 249
L+L +M + ++ R+YVG L + ++L+D F +YG
Sbjct: 246 LSLMSSNMNRSNSNDCRVYVGNLPQDVREKDLHDIFYKYG 285
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
F FV+F + A+DA+K +G F G I V
Sbjct: 302 FAFVEFEDPRDAEDAVKGRDGHEFDGYRIRV 332
>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6116
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 387 KRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQK 554
+RR++ P + P + D+ + E NY NNN + K+ TT Q+
Sbjct: 5821 RRRELREQLREPRIRPRKGVVDSDFQIYKREYNKNYSNNNSENSSSSNKKTTTQQQ 5876
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
+RN+GFV F ++ +++ +KK++ V GK + V
Sbjct: 119 SRNYGFVLFKDDGPSKEVLKKSH--VINGKTVDV 150
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 148 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKMMGL*LI 273
D+ K ++ V L +TTV+EL +YF + G++ G+ L+
Sbjct: 227 DLMAKVIQSKKLMVQDLDFDTTVDELREYFEKCGELTGIDLL 268
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 181 IYVGALSDNTTVEELYDYFIQYGKM 255
++VG L+ T E L DYF Q+G++
Sbjct: 82 VFVGGLASGTDEEGLKDYFEQFGEV 106
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 181 IYVGALSDNTTVEELYDYFIQYGKMMGL*LI 273
+YVG L T ++L D+F Q+G++ + ++
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGELRSISMV 336
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGK 359
II+ +GFV+F A+DA+ + NG G+
Sbjct: 34 IILKDGYGFVEFDYSDDAEDAVYECNGKKMLGE 66
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV-----RAATDKRRDVETVTIYP 422
+ + V++ AQ A++ NG+ G+NI V R + K R ++ VT P
Sbjct: 334 KGYALVEYETFKEAQSALEALNGAEMLGQNISVDWAFIRGPSKKSRSLQAVTSLP 388
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVE 404
+++ +GFV+F E A AIK N GK I V A+ ++++
Sbjct: 52 LHQGYGFVEFLGEEDADYAIKVMNMIKVYGKPIRVNKASAHNKNLD 97
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMMGL*LIEILDLCNS 297
+++VG L+ TT E L +YF YG+ L +++ +C+S
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGE-----LTDVVVICDS 49
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
FGFV F + A A +K NG++ G+ + V
Sbjct: 126 FGFVTFNTAAEANKAREKLNGTIVDGRKVEV 156
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYG 249
++++G L+ TT E+L +YF YG
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFSTYG 226
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
++ F FV++ +AQ A+++ NG + G+NI V
Sbjct: 142 HKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKV 175
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
+++ FGFV + SAQ+AI+ NG K + V+ K
Sbjct: 301 MSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPK 341
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
+++ FGFV + SAQ+AI+ NG K + V+ K
Sbjct: 316 MSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPK 356
>SB_33542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 169 AHLRIYVGALSDNTTVEELYDYFIQYGKMMGL 264
AH+R Y+ D TT E+L + + YG + G+
Sbjct: 677 AHVRKYINEGHDVTTPEQLKNAMLSYGGLQGV 708
>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1238
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 399 VETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFMMREVEA 578
V+T Y E+ + ALK+ E + + G D V + R TTG K + E E
Sbjct: 600 VKTQGGYDEIKESSALKEMMDEAKRTRSEAGSGAEQDAVETKGKIRETTGHKDVEEEAED 659
Query: 579 VAVG 590
+G
Sbjct: 660 RVLG 663
>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
Length = 927
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/81 (22%), Positives = 31/81 (38%)
Frame = +3
Query: 396 DVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFMMREVE 575
D T+ + PEV + + T +++ AY N G + G R VE
Sbjct: 124 DRSTLAVTPEVSTKDSTRQTIKLNDTAIAYSNGGPTATLSLYSYYHSLPNGLSLQTRSVE 183
Query: 576 AVAVGLGPRGKGVRGARSRGP 638
++ G + +RG + P
Sbjct: 184 SIDTTAGLKTWAIRGTATYSP 204
>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
Length = 2489
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +3
Query: 348 FKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDMVFKRN 527
FK KN+ +A R E P PP+ L+ T+ ED N+G+ +N
Sbjct: 73 FKRKNLGFQAPRFVERFEEEFPCIPPQPPSKKLRVTENEDLVLTPSSNHGSTAQ---DKN 129
Query: 528 LKRATTGQKF 557
+ R+ G F
Sbjct: 130 MCRSRRGTSF 139
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/90 (26%), Positives = 40/90 (44%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALK 449
N + FVQFAE SSA A +K + + G+N V+ K + T+ + +
Sbjct: 286 NNPYAFVQFAELSSAIQARRKMDRE-YVGRN-RVKVGFGKVNPINTIWV-------GGVT 336
Query: 450 DTQMEDESEEAYDNYGNNNDMVFKRNLKRA 539
++ E + E + YG +V R +A
Sbjct: 337 NSLSEQQVERHFGRYGRVTKVVINRVTNQA 366
>SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07)
Length = 507
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 82 ISQKYSCNK*ITMADNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYD 231
IS ++ T ADN T+ R+ K+ ++ Y G +S +ELY+
Sbjct: 312 ISDQFDSQSVNTNADNNTVRRLSSSLKTLSNCGWYWGPMSSKEAEKELYN 361
>SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)
Length = 325
Score = 27.9 bits (59), Expect = 7.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 510 CHYYFHSCHKLPHFHLP 460
CHY++H H H+H P
Sbjct: 293 CHYHYHHHHPPYHYHYP 309
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,030,251
Number of Sequences: 59808
Number of extensions: 373138
Number of successful extensions: 1166
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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