Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0814
(657 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 41 7e-04
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 41 9e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 37 0.011
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 37 0.011
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 37 0.011
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 37 0.014
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 35 0.058
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 35 0.058
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 32 0.31
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 32 0.31
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 32 0.31
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 32 0.41
AC024845-1|AAF60850.2| 347|Caenorhabditis elegans Hypothetical ... 31 0.54
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 31 0.95
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 31 0.95
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 31 0.95
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 31 0.95
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 30 1.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 1.3
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 30 1.3
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 30 1.3
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 30 1.3
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 30 1.3
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 30 1.3
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 30 1.3
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 30 1.3
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 29 2.2
AL132876-15|CAD21668.2| 722|Caenorhabditis elegans Hypothetical... 29 2.2
AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical ... 29 2.2
AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA ... 29 2.2
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p... 29 2.9
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 29 2.9
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 29 2.9
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 29 2.9
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 29 3.8
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 29 3.8
Z69883-2|CAA93740.1| 264|Caenorhabditis elegans Hypothetical pr... 28 5.1
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 28 5.1
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 5.1
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 28 6.7
U40411-5|AAV28365.2| 221|Caenorhabditis elegans Hypothetical pr... 28 6.7
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 28 6.7
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 28 6.7
U50068-8|AAB37739.1| 865|Caenorhabditis elegans Hypothetical pr... 27 8.9
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 27 8.9
AL032647-7|CAA21691.2| 360|Caenorhabditis elegans Hypothetical ... 27 8.9
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 27 8.9
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 27 8.9
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 27 8.9
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 27 8.9
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
R F FV+F+EE+ AQ A+++ NG F G+N+ V A
Sbjct: 47 RGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYA 82
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
R F F++FAEE SAQ A+++ NG+ F G+ + V A
Sbjct: 46 RGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLA 81
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 249 ENDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365
+ DG ++ +GFV F E +AQ+AI+K NG + GK +
Sbjct: 154 DEDGF--SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKV 190
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 249 ENDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365
+ DG ++ +GFV F E +AQ+AI+K NG + GK +
Sbjct: 91 DEDGF--SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKV 127
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 249 ENDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365
+ DG ++ +GFV F E +AQ+AI+K NG + GK +
Sbjct: 154 DEDGF--SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKV 190
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
R F FV+F EE++AQ A+ + NG F G+ + V A ++
Sbjct: 45 RGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQNR 83
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 34.7 bits (76), Expect = 0.058
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
++ +GFV F E SAQ AI+K NG + K + V
Sbjct: 184 SKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKG 356
+ FGFV FA++ +A A++K N S+ +G
Sbjct: 278 KGFGFVAFADQDAAGQAVEKLNDSILEG 305
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 34.7 bits (76), Expect = 0.058
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
++ +GFV F E SAQ AI+K NG + K + V
Sbjct: 184 SKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKG 356
+ FGFV FA++ +A A++K N S+ +G
Sbjct: 278 KGFGFVAFADQDAAGQAVEKLNDSILEG 305
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
R F FV F +E SA +A+ K+N + F K + V
Sbjct: 43 RGFAFVGFLDEGSASNALAKSNQTFFNSKKLTV 75
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRD 398
++ FGFVQF A+ A+K G + G ++ ++ + + D
Sbjct: 687 LSMGFGFVQFYTAFDAKTALKDMQGELLDGHSLELKISHRENAD 730
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 32.3 bits (70), Expect = 0.31
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365
+++ FGFV+F ++ A+DA+ NG G+ +
Sbjct: 32 VLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 32.3 bits (70), Expect = 0.31
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365
+++ FGFV+F ++ A+DA+ NG G+ +
Sbjct: 32 VLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 32.3 bits (70), Expect = 0.31
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365
+++ FGFV+F ++ A+DA+ NG G+ +
Sbjct: 32 VLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365
+I+ FGFV F ++ A DA+ NG G+ +
Sbjct: 31 VIMKNGFGFVDFQDQRDADDAVHDLNGKELCGERV 65
>AC024845-1|AAF60850.2| 347|Caenorhabditis elegans Hypothetical
protein Y65B4BL.3 protein.
Length = 347
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = -2
Query: 449 F*CNSRWHFWIYRYGFNISSFISCGSDRDIFSFEYATISFFYCILCT*FFGEL----HKS 282
F C+S +W++R N+ F+ G + F + A + F+ I CT F + H++
Sbjct: 69 FRCSSSTCYWLHRIVLNLPRFMISG---EFFVEKCAYLLIFFFISCTMFLYAVYLVKHET 125
Query: 281 KISINYNPII 252
++ I Y I+
Sbjct: 126 ELKIRYRAIL 135
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 30.7 bits (66), Expect = 0.95
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPE 425
++ +GFV + + A+ AI++ NG + I AT K D E + Y E
Sbjct: 62 SKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNE 113
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 30.7 bits (66), Expect = 0.95
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPE 425
++ +GFV + + A+ AI++ NG + I AT K D E + Y E
Sbjct: 72 SKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNE 123
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 30.7 bits (66), Expect = 0.95
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPE 425
++ +GFV + + A+ AI++ NG + I AT K D E + Y E
Sbjct: 175 SKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNE 226
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 30.7 bits (66), Expect = 0.95
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPE 425
++ +GFV + + A+ AI++ NG + I AT K D E + Y E
Sbjct: 143 SKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNE 194
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT--DKRRDVETVTIYPEVPPAV 440
++ FGFV+F E A AIK N GK I V A+ +K DV + P V
Sbjct: 53 HQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEV 111
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKM 255
++++G LS +T+E++ YF YGK+
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKV 160
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 130 LTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKM 255
L D D S ++++G LS TT E L DYF ++G++
Sbjct: 30 LNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEV 71
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT--DKRRDVETVTIYPEVPPAV 440
++ FGFV+F E A AIK N GK I V A+ +K DV + P V
Sbjct: 63 HQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEV 121
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
F FV+F + A+DA++ +G F G+ I V
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRV 78
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
F FV+F + A+DA++ +G F G+ I V
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRV 78
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT---------DKRRDVETVTIYPE 425
+ FGFVQF E SA ++ + NG +K + V A ++ R T+ P
Sbjct: 119 QGFGFVQFNEAGSADESCRSLNGMSWKACCLDVHLAMLGSLRKPTGNEGRQGNTIAPAP- 177
Query: 426 VPPAVALKDTQMEDESEEAYDNYGNNNDMVFKRN 527
+P L ++ ++ A Y + +FK+N
Sbjct: 178 LPVGKPLTQHAVDTSAQSAKRPYEDEEYEIFKQN 211
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
++++G LS +TT E+L +YF Q+G ++
Sbjct: 50 KLFIGGLSHDTTDEQLGNYFSQWGPVV 76
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
++++G LS +TT E+L +YF Q+G ++
Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQWGPVV 96
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
++++G LS +TT E+L +YF Q+G ++
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVV 97
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKM 255
++++G LS +T+E++ YF YGK+
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKV 160
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 130 LTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKM 255
L D D S ++++G LS TT E L DYF ++G++
Sbjct: 30 LNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEV 71
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 124 DNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYG 249
D LT +++ K+ + +YVG +S TT +L D F YG
Sbjct: 221 DKLTFEQVFNSTKAD-NTSVYVGNISQQTTDADLRDLFSTYG 261
>AL132876-15|CAD21668.2| 722|Caenorhabditis elegans Hypothetical
protein Y105E8A.19 protein.
Length = 722
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 369 VRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDMVFKRNLKR 536
VR A +K + T + P +PP+ A K + E ++ D N N+++ L R
Sbjct: 338 VRDAKEKGYNHSTDSTEPAIPPSEAPKIPSLSSEQKQWKDQLLNGNEILIGEELDR 393
>AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical
protein F09D1.1 protein.
Length = 602
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 393 RDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDM 512
RDV+ I P+VP + L+ + + ++E+ Y Y +NN M
Sbjct: 432 RDVQLQNIIPQVPLSTLLE--KFDGKTEKEYPTYNDNNIM 469
>AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA
synthetase (cytoplasmic)protein.
Length = 722
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 369 VRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDMVFKRNLKR 536
VR A +K + T + P +PP+ A K + E ++ D N N+++ L R
Sbjct: 338 VRDAKEKGYNHSTDSTEPAIPPSEAPKIPSLSSEQKQWKDQLLNGNEILIGEELDR 393
>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
protein C06A5.1 protein.
Length = 1932
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 73 LLTISQKYSCNK*ITMADNLTLDRIDMKQKSTAHLRI----YVGALSDNTTVEEL 225
L++ K + K I MA+N+ LDRID + S +L I +G S T + +
Sbjct: 1190 LVSRMSKETAEKVIKMAENMPLDRIDHQSLSNMYLLIRGYRMIGVQSGETLINRI 1244
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
F FV++ + A+DA++ +GS G V +T +RR
Sbjct: 41 FAFVEYDDVRDAEDAVRALDGSRICGVRARVELSTGQRR 79
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
F FV++ + A+DA++ +GS G V +T +RR
Sbjct: 41 FAFVEYDDVRDAEDAVRALDGSRICGVRARVELSTGQRR 79
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
F FV++ + A+DA++ +GS G V +T +RR
Sbjct: 41 FAFVEYDDVRDAEDAVRALDGSRICGVRARVELSTGQRR 79
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
++ FGFV A A + NG+ +G+ + V AT +
Sbjct: 20 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 59
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
++ FGFV A A + NG+ +G+ + V AT +
Sbjct: 138 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 177
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
++ FGFV A A + NG+ +G+ + V AT +
Sbjct: 138 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 177
>Z69883-2|CAA93740.1| 264|Caenorhabditis elegans Hypothetical
protein C27C12.1 protein.
Length = 264
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +3
Query: 276 NF-GFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKD 452
NF G Q + E+ A I KG+ V D +++TV + + PA+
Sbjct: 74 NFNGNEQLSHENEAHSEIPSLLTFQEKGEEDTVEVTRDNYNEIDTVEDFRSIEPALENSP 133
Query: 453 TQMEDESEEAYDNY 494
+ D+S EA +
Sbjct: 134 KILVDDSMEATQTF 147
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +1
Query: 163 STAHLRIYVGALSDNTTVEELYDYFIQYGK--MMGL*LIEIL 282
+T+ + I+VG ++DNT EL YFI+ + +G +I IL
Sbjct: 1738 ATSKILIHVGDINDNTPEFELSSYFIKISENSKIGSKIIRIL 1779
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 634 PLDRAPRTPLPRGPKPTATASTS 566
P APR P P GP P+A+A S
Sbjct: 112 PTRAAPRAPGPSGPPPSASAPNS 134
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKG 356
+++ GFV+F ++ A AIK NGS+ G
Sbjct: 167 LSKGVGFVRFDKKDEADVAIKTLNGSIPSG 196
>U40411-5|AAV28365.2| 221|Caenorhabditis elegans Hypothetical
protein B0403.6 protein.
Length = 221
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 184 YVGALSDNTTVEELYDYFIQYGKMMGL*LIEILDLCNSPK 303
Y+G T + Y YF G + + L E++D+C + K
Sbjct: 50 YLGNFQSQTAIYAAYGYFFFTGISLFVYLFEMIDVCKTLK 89
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
+R FGFV+F A AI N S GK I V A
Sbjct: 51 HRGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFA 87
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 160 KSTAHLRIYVGALSDNTTVEELYDYFIQYG 249
+ T +I+VG L +T+ + L++YF Q+G
Sbjct: 30 RDTMFTKIFVGGLPYHTSDKTLHEYFEQFG 59
>U50068-8|AAB37739.1| 865|Caenorhabditis elegans Hypothetical
protein C01G5.8 protein.
Length = 865
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 351 KGKNIPVRAATDKRRDVETVTIYPEVP-PAVALKDTQMEDESEEAYDNYGNNNDMVFKRN 527
K +N R TD+R I PEVP P+ +K+ +M ES + + N + V K++
Sbjct: 96 KSENPTKRRKTDEREVPSEDDIVPEVPGPSGIVKNHEMPSESLDVTE-ISENIEKVIKKS 154
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKM 255
+I+VG L+ NTT + + +++ Q+G++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEI 49
>AL032647-7|CAA21691.2| 360|Caenorhabditis elegans Hypothetical
protein Y57A10B.4 protein.
Length = 360
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 164 DFCFISILSNVRLSAIVIYLLQLYFC 87
D+ F+ +L NV LSA ++ + L FC
Sbjct: 285 DWIFVHLLDNVILSAALVISIALLFC 310
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKM 255
+I+VG L+ NTT + + +++ Q+G++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEI 49
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKM 255
+I+VG L+ NTT + + +++ Q+G++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEI 49
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 160 KSTAHLRIYVGALSDNTTVEELYDYFIQYGKM 255
K +I+VG +S E+L +F QYG++
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEV 55
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 160 KSTAHLRIYVGALSDNTTVEELYDYFIQYGKM 255
K +I+VG +S E+L +F QYG++
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEV 55
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,545,697
Number of Sequences: 27780
Number of extensions: 299156
Number of successful extensions: 962
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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