BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0814 (657 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 41 8e-04 At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 40 0.001 At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 40 0.001 At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 38 0.004 At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 38 0.006 At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.008 At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 37 0.010 At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 36 0.018 At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 36 0.018 At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 36 0.018 At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 36 0.018 At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 36 0.018 At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 36 0.018 At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.041 At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 35 0.055 At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 35 0.055 At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 34 0.072 At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 34 0.072 At5g51300.2 68418.m06360 splicing factor-related contains simila... 34 0.096 At5g51300.1 68418.m06359 splicing factor-related contains simila... 34 0.096 At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 34 0.096 At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 34 0.096 At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 34 0.096 At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 33 0.22 At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.22 At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 33 0.22 At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 32 0.29 At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 32 0.29 At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 32 0.29 At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 32 0.29 At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 32 0.29 At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 32 0.29 At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 32 0.29 At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 32 0.29 At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 32 0.39 At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 31 0.51 At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 31 0.51 At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 31 0.51 At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 31 0.51 At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 31 0.51 At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 31 0.51 At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 31 0.67 At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 31 0.67 At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 31 0.67 At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 31 0.67 At5g05140.1 68418.m00545 transcription elongation factor-related... 31 0.89 At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contai... 31 0.89 At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 31 0.89 At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 30 1.2 At5g28823.1 68418.m03544 hypothetical protein 30 1.6 At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 30 1.6 At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 30 1.6 At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 30 1.6 At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 30 1.6 At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 2.1 At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 29 2.1 At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 2.1 At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 29 2.1 At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 29 2.1 At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 29 2.7 At3g57530.1 68416.m06406 calcium-dependent protein kinase, putat... 29 2.7 At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 29 2.7 At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 29 2.7 At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 29 3.6 At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 29 3.6 At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 29 3.6 At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 29 3.6 At2g47310.1 68415.m05906 flowering time control protein-related ... 29 3.6 At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 29 3.6 At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 3.6 At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 28 4.8 At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 28 4.8 At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 28 4.8 At2g21410.1 68415.m02548 vacuolar proton ATPase, putative simila... 28 4.8 At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 28 4.8 At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 28 6.3 At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 28 6.3 At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 28 6.3 At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 28 6.3 At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 28 6.3 At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 28 6.3 At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 28 6.3 At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 28 6.3 At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 28 6.3 At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 28 6.3 At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 28 6.3 At1g49750.1 68414.m05579 leucine-rich repeat family protein cont... 28 6.3 At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.3 At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.3 At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.3 At5g12480.1 68418.m01466 calmodulin-domain protein kinase isofor... 27 8.3 At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 27 8.3 At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 27 8.3 At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 27 8.3 At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 27 8.3 At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 27 8.3 At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin... 27 8.3 At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF... 27 8.3 At1g64340.1 68414.m07291 hypothetical protein 27 8.3 >At2g23350.1 68415.m02788 polyadenylate-binding protein, putative / PABP, putative Length = 662 Score = 40.7 bits (91), Expect = 8e-04 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVR--AATDKRRDVETVTIYPEVPPAVA 443 +R +GFVQF E SA++AI+K NG V K I V ++R + V Sbjct: 173 SRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNV-YVKN 231 Query: 444 LKDTQMEDESEEAYDNYGNNNDMVFKRN 527 L + +DE + + YG+ + V R+ Sbjct: 232 LSEATTDDELKTTFGQYGSISSAVVMRD 259 Score = 30.3 bits (65), Expect = 1.2 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Frame = +3 Query: 243 IRENDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-RRDVETVTIY 419 +R+ DG +R FGFV F A A++ NG F K V A K R++E Y Sbjct: 257 MRDGDG--KSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRY 314 Query: 420 PE 425 + Sbjct: 315 EQ 316 Score = 27.9 bits (59), Expect = 6.3 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +1 Query: 181 IYVGALSDNTTVEELYDYFIQ 243 +YVG L N T +LYDYF + Sbjct: 48 LYVGDLDFNVTDSQLYDYFTE 68 >At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 136 Score = 39.9 bits (89), Expect = 0.001 Identities = 18/40 (45%), Positives = 26/40 (65%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 +R FGFV F+ E SA +AIK+ +G G+ I V AT++ Sbjct: 75 SRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114 >At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 136 Score = 39.9 bits (89), Expect = 0.001 Identities = 18/40 (45%), Positives = 26/40 (65%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 +R FGFV F+ E SA +AIK+ +G G+ I V AT++ Sbjct: 75 SRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114 >At3g19130.1 68416.m02429 RNA-binding protein, putative similar to RNA Binding Protein 47 [Nicotiana plumbaginifolia] GI:9663769, DNA binding protein ACBF GB:AAC49850 from [Nicotiana tabacum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 435 Score = 38.3 bits (85), Expect = 0.004 Identities = 19/34 (55%), Positives = 24/34 (70%) Frame = +3 Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKN 362 I V + GFVQFA+ SA+DAI+ NG+V GKN Sbjct: 352 IPVGKGCGFVQFADRKSAEDAIESLNGTVI-GKN 384 Score = 31.9 bits (69), Expect = 0.39 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 392 ++ +GFV+F +E+ A+ + NG+ + + V AT KR Sbjct: 243 SKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKR 283 Score = 28.7 bits (61), Expect = 3.6 Identities = 10/35 (28%), Positives = 21/35 (60%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 374 + +GFV+F ++A++ ++ +GSV + P R Sbjct: 148 SEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFR 182 >At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial (RPS19) Length = 212 Score = 37.9 bits (84), Expect = 0.006 Identities = 18/39 (46%), Positives = 20/39 (51%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATD 386 +R +GFV F E SA AI NG G NI V A D Sbjct: 71 SRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKD 109 >At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5) identical to GB:Q05196 from [Arabidopsis thaliana] Length = 668 Score = 37.5 bits (83), Expect = 0.008 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNI----PVRAATDKRRDVETVTIYPEVPPA 437 ++ +GFVQF +E +AQ AI K NG + K + VR R + V + V Sbjct: 171 SKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVK 230 Query: 438 VALKDTQMEDESEEAYDNYGNNNDMVFKRNL---KRATTGQKFMMREVEAVAV 587 K+ +DE ++ + YG+ + V ++ R+ F+ E AVAV Sbjct: 231 NLPKEI-TDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 282 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVE 404 +R+FGFV F +A A++K NG + G+++ K+ D E Sbjct: 264 SRSFGFVNFVSPEAAAVAVEKMNG-ISLGEDVLYVGRAQKKSDRE 307 Score = 27.9 bits (59), Expect = 6.3 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = +3 Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-RRDVETVTIYPEV 428 ++R FGFV ++ A A+K+ NG + K + V A K R +++ ++ Sbjct: 366 LSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQI 420 >At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative Length = 425 Score = 37.1 bits (82), Expect = 0.010 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR-----RDVETVTIYP-EVP 431 ++ +GFV+FAEES A+ + NG + + + AAT K+ + T +YP VP Sbjct: 157 SKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVP 216 Query: 432 PAVA 443 AVA Sbjct: 217 SAVA 220 Score = 27.5 bits (58), Expect = 8.3 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +3 Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSV 347 I + +G+VQF SA++A+++ G V Sbjct: 268 IPATKGYGYVQFKTRPSAEEAVQRMQGQV 296 >At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 92 Score = 36.3 bits (80), Expect = 0.018 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 +R FGFV F +E + +DAI++ NG G+ I V A + Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85 >At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 126 Score = 36.3 bits (80), Expect = 0.018 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 +R FGFV F +E + +DAI++ NG G+ I V A + Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85 >At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 169 Score = 36.3 bits (80), Expect = 0.018 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 +R FGFV F +E + +DAI++ NG G+ I V A + Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85 >At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arabidopsis thaliana} Length = 159 Score = 36.3 bits (80), Expect = 0.018 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 +R FGFV F +E + +DAI+ NG G++I V A + Sbjct: 48 SRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87 >At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arabidopsis thaliana} Length = 176 Score = 36.3 bits (80), Expect = 0.018 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 +R FGFV F +E + +DAI+ NG G++I V A + Sbjct: 48 SRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87 >At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) Length = 660 Score = 36.3 bits (80), Expect = 0.018 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVR---AATDKRRDVETVTIYPEVPPAV 440 ++ +GFVQF +E SAQ AI K NG + K + V ++ RD T T Sbjct: 175 SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVK 234 Query: 441 ALKDTQMEDESEEAYDNYGNNNDMVFKRN 527 L EDE + + +G + V R+ Sbjct: 235 NLPKEIGEDELRKTFGKFGVISSAVVMRD 263 >At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing protein similar to SP|Q14011 Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 157 Score = 35.1 bits (77), Expect = 0.041 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATD 386 + FGF+ F E AQ A+K NG + G+ I V A + Sbjct: 107 KGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAKE 144 >At1g49760.1 68414.m05580 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from [Nicotiana tabacum] Length = 671 Score = 34.7 bits (76), Expect = 0.055 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-RRDVETVTIYPEVPPAVAL 446 ++ +GFVQ+ + +AQ AI K NG + K + V K +RD + L Sbjct: 172 SKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNL 231 Query: 447 KDTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFM 560 ++ ++E + + +G V R+ + + G F+ Sbjct: 232 SESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFV 269 Score = 28.7 bits (61), Expect = 3.6 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Frame = +3 Query: 255 DGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-RRDVE 404 DG ++ FGFV F A A+ NG F K V A K R+ E Sbjct: 258 DGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETE 308 >At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein ACBF GB:U90212 GI:1899187 from [Nicotiana tabacum] Length = 445 Score = 34.7 bits (76), Expect = 0.055 Identities = 18/34 (52%), Positives = 22/34 (64%) Frame = +3 Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKN 362 I V + GFVQFA SA++AI NG+V GKN Sbjct: 358 IPVGKGCGFVQFANRQSAEEAIGNLNGTVI-GKN 390 Score = 31.5 bits (68), Expect = 0.51 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 392 ++ +GFV+F +E+ A+ + NG+ + + V AT KR Sbjct: 254 SKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKR 294 >At2g36660.1 68415.m04496 polyadenylate-binding protein, putative / PABP, putative Length = 609 Score = 34.3 bits (75), Expect = 0.072 Identities = 25/97 (25%), Positives = 40/97 (41%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALK 449 +R +GFVQF +E +A AI+ N ++ K I V K V+ Y + Sbjct: 151 SRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDA 210 Query: 450 DTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFM 560 D ED E + +G + ++ R G F+ Sbjct: 211 DVS-EDLLREKFAEFGKIVSLAIAKDENRLCRGYAFV 246 Score = 33.5 bits (73), Expect = 0.13 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 ++ FGFV F+ A DA+K +G +F GK + V A K Sbjct: 343 SKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382 >At1g34140.1 68414.m04235 polyadenylate-binding protein, putative / PABP, putative non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from [Triticum aestivum] GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis thaliana} SP|P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 407 Score = 34.3 bits (75), Expect = 0.072 Identities = 20/50 (40%), Positives = 25/50 (50%) Frame = +3 Query: 255 DGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVE 404 DG +R FGFV F + +A AI+K NG V K + V A K E Sbjct: 153 DGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTE 202 Score = 29.5 bits (63), Expect = 2.1 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = +3 Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-RRDVETVTIYPEVPPA 437 +++ GFV+F+ A A+ K NG + K I V A K + + T + PP+ Sbjct: 261 ISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQFNNPPPS 318 Score = 27.9 bits (59), Expect = 6.3 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +3 Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371 V++ +GFVQF + S A NG++ + ++I V Sbjct: 69 VSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHV 103 >At5g51300.2 68418.m06360 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 33.9 bits (74), Expect = 0.096 Identities = 13/38 (34%), Positives = 25/38 (65%) Frame = +3 Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380 +++ +GFV++A+ A A++ NG F+G+ + VR A Sbjct: 519 LSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556 >At5g51300.1 68418.m06359 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 33.9 bits (74), Expect = 0.096 Identities = 13/38 (34%), Positives = 25/38 (65%) Frame = +3 Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380 +++ +GFV++A+ A A++ NG F+G+ + VR A Sbjct: 519 LSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556 >At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 358 Score = 33.9 bits (74), Expect = 0.096 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%) Frame = +3 Query: 273 RNFGFVQFAEESSAQDAIKKA---NGSVFKGK-NIPVRAATDKRRDVETVTIYPEVPPAV 440 R FGF+ FA+ S I+ NG + K IP A ++ +D++T I+ Sbjct: 60 RGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIF-----VG 114 Query: 441 ALKDTQMEDESEEAYDNYGN-NNDMVFKRNLKRATTGQKFMMREVEAVAVGLGPRG 605 + T EDE ++ + YGN V + + + G F++ + E V L +G Sbjct: 115 GIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170 Score = 29.1 bits (62), Expect = 2.7 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +1 Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258 +I+VG + T +EL D+F +YG ++ Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVV 136 >At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 231 Score = 33.9 bits (74), Expect = 0.096 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%) Frame = +3 Query: 273 RNFGFVQFAEESSAQDAIKKA---NGSVFKGK-NIPVRAATDKRRDVETVTIYPEVPPAV 440 R FGF+ FA+ S I+ NG + K IP A ++ +D++T I+ Sbjct: 60 RGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIF-----VG 114 Query: 441 ALKDTQMEDESEEAYDNYGN-NNDMVFKRNLKRATTGQKFMMREVEAVAVGLGPRG 605 + T EDE ++ + YGN V + + + G F++ + E V L +G Sbjct: 115 GIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170 Score = 29.1 bits (62), Expect = 2.7 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +1 Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258 +I+VG + T +EL D+F +YG ++ Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVV 136 >At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 1003 Score = 33.9 bits (74), Expect = 0.096 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +3 Query: 252 NDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 N G +R F FV+FA + AI+ NGS G+ I V+ A + Sbjct: 54 NKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHR 99 Score = 30.7 bits (66), Expect = 0.89 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +3 Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 + F FV+F + A +AIKK NG +F + I V A K Sbjct: 372 KGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPK 410 >At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 289 Score = 32.7 bits (71), Expect = 0.22 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395 +R FGFVQ + E+ AI +G +G+ I V A ++ R Sbjct: 247 SRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTR 288 >At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 105 Score = 32.7 bits (71), Expect = 0.22 Identities = 13/25 (52%), Positives = 19/25 (76%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGS 344 +R FGFV F +E + +DAI++ NGS Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGS 70 >At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to RNA binding protein GI:18181938 from (Arabidopsis thaliana); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain 15450911 gb AY054536.1 Length = 360 Score = 32.7 bits (71), Expect = 0.22 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = +1 Query: 178 RIYVGALSDNTTVEELYDYFIQYGK 252 +I+VG LS NTT EE YF ++G+ Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGR 145 >At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing protein low similarity to glycine-rich RNA-binding protein [Euphorbia esula] GI:2645699; contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 337 Score = 32.3 bits (70), Expect = 0.29 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +3 Query: 252 NDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 ND + + +GFV F+ SA DAI+ +G G+ + V T + Sbjct: 40 NDRSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAVRVNDVTTR 85 >At5g06210.1 68418.m00693 RNA-binding protein, putative contains similarity to RNA-binding protein from [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925, [Solanum tuberosum] GI:15822705; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 146 Score = 32.3 bits (70), Expect = 0.29 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 392 ++ FGFV FA AQ A+ + NG G+ I V A K+ Sbjct: 74 SKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQ 114 >At3g14100.1 68416.m01782 oligouridylate-binding protein, putative similar to GB:CAB75429 (GI:6996560) from [Nicotiana plumbaginifolia], contains Pfam profiles: PF00076 RNA recognition motif (3 copies) Length = 427 Score = 32.3 bits (70), Expect = 0.29 Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 3/111 (2%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALK 449 +R FGFV F + AQ AI + NG + I AT K + + V L Sbjct: 184 SRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWAT-KGATSGDDKLSSDGKSVVELT 242 Query: 450 DTQMEDESEEAYDNYGNNNDM---VFKRNLKRATTGQKFMMREVEAVAVGL 593 ED E + NN V+ NL T Q + R A+ G+ Sbjct: 243 TGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVT-QLDLHRYFHALGAGV 292 >At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA splicing factor SF3b 49 kDa subunit) {Homo sapiens}; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 363 Score = 32.3 bits (70), Expect = 0.29 Identities = 14/46 (30%), Positives = 26/46 (56%) Frame = +3 Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVE 404 +++N+GF+++ E A AIK N GK I V A+ ++ ++ Sbjct: 64 LHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLD 109 >At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein from {Daucus carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 185 Score = 32.3 bits (70), Expect = 0.29 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRA 377 ++ F FV F +E S + AI + NG G+NI +A Sbjct: 84 SKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITAQA 119 >At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative similar to RNA binding protein(RZ-1) GI:1435061 from [Nicotiana sylvestris]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 292 Score = 32.3 bits (70), Expect = 0.29 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = +3 Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 R FGF+ F + A DAIK +G K I V A K Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91 >At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative similar to RNA binding protein(RZ-1) GI:1435061 from [Nicotiana sylvestris]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 292 Score = 32.3 bits (70), Expect = 0.29 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = +3 Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 R FGF+ F + A DAIK +G K I V A K Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91 >At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33) nearly identical to SC35-like splicing factor SCL33, 33 kD [Arabidopsis thaliana] GI:9843659 Length = 220 Score = 32.3 bits (70), Expect = 0.29 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +3 Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395 R FGFVQF + + A DA +G + G+ + V A + R+ Sbjct: 77 RGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRK 117 >At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30) nearly identical to SC35-like splicing factor SCL30, 30 kD [Arabidopsis thaliana] GI:9843657; Serine/arginine-rich protein/putative splicing factor, Arabidopdis thaliana, EMBL:AF099940; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 262 Score = 31.9 bits (69), Expect = 0.39 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +3 Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTI 416 R F FV+F + A +A + N F G+ I V A++ R+ E + + Sbjct: 88 RGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESRKRPEEMRV 135 >At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 261 Score = 31.5 bits (68), Expect = 0.51 Identities = 11/27 (40%), Positives = 21/27 (77%) Frame = +1 Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258 +++VG L+ +T E +YD+FI+YG ++ Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDIL 44 >At1g54080.2 68414.m06163 oligouridylate-binding protein, putative similar to oligouridylate binding protein GI:6996560 from [Nicotiana plumbaginifolia] Length = 430 Score = 31.5 bits (68), Expect = 0.51 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT 383 +R FGFV F + AQ AI + NG + I AT Sbjct: 192 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 229 >At1g54080.1 68414.m06162 oligouridylate-binding protein, putative similar to oligouridylate binding protein GI:6996560 from [Nicotiana plumbaginifolia] Length = 426 Score = 31.5 bits (68), Expect = 0.51 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT 383 +R FGFV F + AQ AI + NG + I AT Sbjct: 188 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 225 >At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 434 Score = 31.5 bits (68), Expect = 0.51 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = +3 Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSV 347 I V + GFVQF +A++A++K NG+V Sbjct: 337 IPVGKGCGFVQFVNRPNAEEALEKLNGTV 365 >At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 432 Score = 31.5 bits (68), Expect = 0.51 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = +3 Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSV 347 I V + GFVQF +A++A++K NG+V Sbjct: 335 IPVGKGCGFVQFVNRPNAEEALEKLNGTV 363 >At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 146 Score = 31.5 bits (68), Expect = 0.51 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = +1 Query: 166 TAHLRIYVGALSDNTTVEELYDYFIQYGKMM 258 T H +++VG L+ T +E+ YF Q+G+++ Sbjct: 14 TTHTKVFVGGLAWETPTDEMRRYFDQFGEIL 44 >At3g16380.1 68416.m02074 polyadenylate-binding protein, putative / PABP, putative similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens} SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 537 Score = 31.1 bits (67), Expect = 0.67 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVA-L 446 ++ FGFVQF E SA A +GS+ GK + V +K V L Sbjct: 150 SKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNL 209 Query: 447 KDTQMEDESEEAYDNYGNNNDMVFKRN 527 +T +D + YG + +V R+ Sbjct: 210 IETVTDDCLHTLFSQYGTVSSVVVMRD 236 Score = 28.3 bits (60), Expect = 4.8 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = +3 Query: 255 DGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA--TDKRRDV 401 DG+ +R FGFV F +A+ A++ G K + V A D+RR++ Sbjct: 236 DGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREM 286 >At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a) almost identical to SC35-like splicing factor SCL30a GI:9843661 from [Arabidopsis thaliana]; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 262 Score = 31.1 bits (67), Expect = 0.67 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = +3 Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395 R FGF+QF + + A +A + +G + G+ + V A + R+ Sbjct: 78 RGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 118 >At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to SP|P19684 33 kDa ribonucleoprotein, chloroplast precursor {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 308 Score = 31.1 bits (67), Expect = 0.67 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 374 +GFV FA A++AI K NG G+ I ++ Sbjct: 238 YGFVSFATREEAENAITKLNGKEIMGRPITLK 269 >At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing protein Length = 561 Score = 31.1 bits (67), Expect = 0.67 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = +3 Query: 231 LLHTIRENDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 L+ R+ G+ + FGFVQFA A++A+ G+ I V A TD+ Sbjct: 313 LVQVPRDETGLC--KGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSAVTDQ 363 >At5g05140.1 68418.m00545 transcription elongation factor-related low similarity to transcription elongation factor TFIIS.h [Mus musculus] GI:3288547, elongin A [Mus musculus] GI:6009624 Length = 436 Score = 30.7 bits (66), Expect = 0.89 Identities = 14/50 (28%), Positives = 27/50 (54%) Frame = +3 Query: 321 AIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDE 470 +IK ++ + F G PV+ +T++R ETV+++ P + K E + Sbjct: 312 SIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQK 361 >At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contains weak similarity to Ubiquitin-protein ligase E3 Mdm2 (EC 6.3.2.-) (p53-binding protein Mdm2) (Oncoprotein Mdm2) (Double minute 2 protein) (Swiss-Prot:P23804) [Mus musculus] Length = 785 Score = 30.7 bits (66), Expect = 0.89 Identities = 14/50 (28%), Positives = 29/50 (58%) Frame = +3 Query: 384 DKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDMVFKRNLK 533 +++ + + V + P ++D Q+ED ++ +N+D+VFK+NLK Sbjct: 120 NRKLNKDMVAVVSRCPTCATMQDHQIEDRNQR------HNDDVVFKKNLK 163 >At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative similar to gb|U90212 DNA binding protein ACBF from Nicotiana tabacum and contains 3 PF|00076 RNA recognition motif domains. ESTs gb|T44278, gb|R65195, gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278, gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1 Length = 405 Score = 30.7 bits (66), Expect = 0.89 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +3 Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365 I + GFVQF+E+S A++A++ NG G + Sbjct: 292 IPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTV 326 >At3g08000.1 68416.m00977 RNA-binding protein, putative similar to RNA-binding protein from [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 143 Score = 30.3 bits (65), Expect = 1.2 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395 +R FGFV FAEE A A +G G+ + + A ++ R Sbjct: 81 SRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALERVR 122 >At5g28823.1 68418.m03544 hypothetical protein Length = 568 Score = 29.9 bits (64), Expect = 1.6 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Frame = +3 Query: 450 DTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFMMREVE----AVAVGLGPRGKGVR 617 D + ++S + ++D NLK +G+ R ++ A+ +G G RG+G R Sbjct: 497 DVVLREDSNMVDSDKSEDSDEDLIMNLKSTFSGKHLQDRPLQFPNKAINIGHGGRGRGRR 556 Query: 618 GARSRG 635 G +RG Sbjct: 557 GRGNRG 562 >At5g04280.1 68418.m00421 glycine-rich RNA-binding protein Length = 310 Score = 29.9 bits (64), Expect = 1.6 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 +R FGF+ FA+ + ++I++ +G F + I V A K Sbjct: 47 SRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPK 86 >At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2) non-consensus TA donor splice site at exon 2, polyadenylate-binding protein - Triticum aestivum (common wheat),PIR:T06979 Length = 443 Score = 29.9 bits (64), Expect = 1.6 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Frame = +3 Query: 255 DGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV-RAATDKRRDVETVTIYPE 425 DG ++ FGFV F A A++ NG F K V RA R+ E Y + Sbjct: 63 DGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 120 Score = 27.5 bits (58), Expect = 8.3 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +1 Query: 148 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKM 255 D T +YV L+++TT ++L + F +YGK+ Sbjct: 20 DSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKI 55 >At4g16280.3 68417.m02471 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 533 Score = 29.9 bits (64), Expect = 1.6 Identities = 14/53 (26%), Positives = 33/53 (62%) Frame = +1 Query: 118 MADNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKMMGL*LIE 276 ++D+ + D+ +S+ ++++VG++ T EE+ YF Q+G ++ + LI+ Sbjct: 102 ISDHGSFTGTDVSDRSST-VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153 Score = 27.5 bits (58), Expect = 8.3 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 5/128 (3%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGS-VFKGKNIP--VRAATDKR-RDVETVTIYPEVPPA 437 +R GFV+++ + +A AI NG+ +G N P VR A KR + E+ E+ P Sbjct: 250 SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGES----REMAPP 305 Query: 438 VAL-KDTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFMMREVEAVAVGLGPRGKGV 614 V L + + N+G+++ V N R T + VG P G+ Sbjct: 306 VGLGSGPRFQASGPRPTSNFGDSSGDVSHTNPWRPATSRN----------VG-PPSNTGI 354 Query: 615 RGARSRGP 638 RGA S P Sbjct: 355 RGAGSDFP 362 >At4g16280.2 68417.m02470 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 747 Score = 29.9 bits (64), Expect = 1.6 Identities = 14/53 (26%), Positives = 33/53 (62%) Frame = +1 Query: 118 MADNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKMMGL*LIE 276 ++D+ + D+ +S+ ++++VG++ T EE+ YF Q+G ++ + LI+ Sbjct: 102 ISDHGSFTGTDVSDRSST-VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153 Score = 27.5 bits (58), Expect = 8.3 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 5/128 (3%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGS-VFKGKNIP--VRAATDKR-RDVETVTIYPEVPPA 437 +R GFV+++ + +A AI NG+ +G N P VR A KR + E+ E+ P Sbjct: 250 SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGES----REMAPP 305 Query: 438 VAL-KDTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFMMREVEAVAVGLGPRGKGV 614 V L + + N+G+++ V N R T + VG P G+ Sbjct: 306 VGLGSGPRFQASGPRPTSNFGDSSGDVSHTNPWRPATSRN----------VG-PPSNTGI 354 Query: 615 RGARSRGP 638 RGA S P Sbjct: 355 RGAGSDFP 362 >At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative contains similarity to polyadenylate-binding protein 5 Length = 387 Score = 29.5 bits (63), Expect = 2.1 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = +3 Query: 282 GFVQFAEESSAQDAIKKANGSVFKGKNI 365 GFVQ+A ++SA+ A+ NG+ G++I Sbjct: 298 GFVQYANKASAEHALSVLNGTQLGGQSI 325 Score = 27.5 bits (58), Expect = 8.3 Identities = 11/40 (27%), Positives = 23/40 (57%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 ++ +GFV+FA+E+ A+ + NG + + + A +K Sbjct: 195 SKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANK 234 >At5g41690.1 68418.m05067 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein GI:7673355 from [Nicotiana tabacum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 620 Score = 29.5 bits (63), Expect = 2.1 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +3 Query: 282 GFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389 GFV+FA + A++A++K NG I + A K Sbjct: 170 GFVEFASVNEAEEALQKKNGECLDNNKIFLDVANKK 205 Score = 29.5 bits (63), Expect = 2.1 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 282 GFVQFAEESSAQDAIKKANGSVFKGKNI 365 GFV+FA + AQ A++K NG + + I Sbjct: 532 GFVEFASVNEAQKALQKMNGENLRSREI 559 >At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 783 Score = 29.5 bits (63), Expect = 2.1 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +3 Query: 243 IRENDGIIVNRNFGFVQFAEESSAQDAIKKANGS 344 +R NDG +R FGF+ F AQ AIK N + Sbjct: 1 MRSNDG--KSRQFGFIGFRSAQEAQQAIKYFNNT 32 Score = 27.5 bits (58), Expect = 8.3 Identities = 12/44 (27%), Positives = 22/44 (50%) Frame = +3 Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRD 398 ++ +GFV+F +A + G+V G + +R +KR D Sbjct: 613 LSSGYGFVEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSD 656 >At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing protein similar to nucleolin protein; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 495 Score = 29.5 bits (63), Expect = 2.1 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371 R+FGFV +AE SSA A+K G+ + V Sbjct: 331 RDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 363 >At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 289 Score = 29.5 bits (63), Expect = 2.1 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380 ++ FGFV + Q+AIK +G+ G+ I V A Sbjct: 244 SKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280 >At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing protein low similarity to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 172 Score = 29.1 bits (62), Expect = 2.7 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +3 Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 374 +G+V F + AQ A++ NG F G+ I V+ Sbjct: 120 YGYVWFNSKEDAQSAVEAMNGKFFDGRFILVK 151 >At3g57530.1 68416.m06406 calcium-dependent protein kinase, putative / CDPK, putative similar to calmodulin-domain protein kinase CDPK isoform 7 [Arabidopsis thaliana] gi|1399277|gb|AAB03247 Length = 538 Score = 29.1 bits (62), Expect = 2.7 Identities = 22/64 (34%), Positives = 27/64 (42%) Frame = +3 Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQ 458 FG + D A S+ K K D RR+VE + PE P V LK+T Sbjct: 74 FGVTYLCTDKETDDVF--ACKSILKKKLRTAVDIEDVRREVEIMRHMPEHPNVVTLKET- 130 Query: 459 MEDE 470 EDE Sbjct: 131 YEDE 134 >At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif-containing protein SEB-4 GI:8895698 from [Xenopus laevis]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 271 Score = 29.1 bits (62), Expect = 2.7 Identities = 10/31 (32%), Positives = 21/31 (67%) Frame = +1 Query: 166 TAHLRIYVGALSDNTTVEELYDYFIQYGKMM 258 T + +++VG L+ T +E+ YF Q+G+++ Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEIL 44 >At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif-containing protein SEB-4 GI:8895698 from [Xenopus laevis]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 287 Score = 29.1 bits (62), Expect = 2.7 Identities = 10/31 (32%), Positives = 21/31 (67%) Frame = +1 Query: 166 TAHLRIYVGALSDNTTVEELYDYFIQYGKMM 258 T + +++VG L+ T +E+ YF Q+G+++ Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEIL 44 >At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 455 Score = 28.7 bits (61), Expect = 3.6 Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Frame = +1 Query: 148 DMKQKSTAHL-RIYVGALSDNTTVEELYDYFIQYGKMM 258 + K +S + L ++++G +S +T E L +YF +YG ++ Sbjct: 5 EQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLV 42 >At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 334 Score = 28.7 bits (61), Expect = 3.6 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380 ++ FGFV + Q AI NG+ G+ I V A Sbjct: 289 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 325 Score = 27.9 bits (59), Expect = 6.3 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRA 377 +R FGFV + + + A ++ NG F+G+ + V A Sbjct: 139 SRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNA 174 >At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 342 Score = 28.7 bits (61), Expect = 3.6 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380 ++ FGFV + Q AI NG+ G+ I V A Sbjct: 297 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 333 Score = 27.9 bits (59), Expect = 6.3 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRA 377 +R FGFV + + + A ++ NG F+G+ + V A Sbjct: 139 SRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNA 174 >At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear transport factor 2 (NTF2) domain Length = 1294 Score = 28.7 bits (61), Expect = 3.6 Identities = 23/78 (29%), Positives = 36/78 (46%) Frame = +3 Query: 276 NFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDT 455 ++GFV+F EE++AQ AI KA+ +++ V KR D P P + + Sbjct: 1116 SYGFVEFKEENAAQRAI-KASPVTIDLRSVYVE---KKRPDYIRYWDTPSTGPGIIYRSE 1171 Query: 456 QMEDESEEAYDNYGNNND 509 M + Y N G N + Sbjct: 1172 GMSVTKD--YGNKGGNEN 1187 >At2g47310.1 68415.m05906 flowering time control protein-related / FCA gamma-related Length = 512 Score = 28.7 bits (61), Expect = 3.6 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Frame = +3 Query: 255 DGIIVNRNFGFVQFAEESSAQDAIKKANG-SVFKGKNIP--VRAATDKRRDVETVTIYPE 425 D + + R + FVQF+ + A AIK NG +G + P VR A K+ + Sbjct: 241 DDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGSDQPLIVRFADPKKPRLGEQRSTFN 300 Query: 426 VPPAVALKDTQMEDESEEAYDN 491 PPA+ D + ++N Sbjct: 301 TPPAMQHFDPNWHSQPYPQWEN 322 >At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, putative similar to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 224 Score = 28.7 bits (61), Expect = 3.6 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380 + RNF FVQFA + A A+ + S K + V A Sbjct: 101 MRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYA 138 >At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, putative similar to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 250 Score = 28.7 bits (61), Expect = 3.6 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380 + RNF FVQFA + A A+ + S K + V A Sbjct: 127 MRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYA 164 >At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40 (RSP40) identical to SP|P92965 Arginine/serine-rich splicing factor RSP40 {Arabidopsis thaliana} Length = 309 Score = 28.3 bits (60), Expect = 4.8 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +3 Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380 + RNF F+Q+ + A A+ +N S K I V A Sbjct: 88 IRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 125 >At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40 (RSP40) identical to SP|P92965 Arginine/serine-rich splicing factor RSP40 {Arabidopsis thaliana} Length = 350 Score = 28.3 bits (60), Expect = 4.8 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +3 Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380 + RNF F+Q+ + A A+ +N S K I V A Sbjct: 129 IRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 166 >At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa, putative Length = 333 Score = 28.3 bits (60), Expect = 4.8 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +1 Query: 148 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKMMGL*LI 273 D K + ++VG LS +TT + L + +YG++ L L+ Sbjct: 55 DSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLV 96 >At2g21410.1 68415.m02548 vacuolar proton ATPase, putative similar to vacuolar proton ATPase 100-kDa subunit from Dictyostelium discoideum P|1384136|gb|AAB49621 Length = 821 Score = 28.3 bits (60), Expect = 4.8 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Frame = +3 Query: 372 RAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNY-----GNNNDMVFKRNLKR 536 R+AT ++ ++ET + ++ A L++ + D +++ + MVF+R L R Sbjct: 154 RSATAQQSEIETEQVGEDLLEAPLLQEEKSVDPTKQVKLGFLTGLVPREKSMVFERILFR 213 Query: 537 ATTGQKFMMREV 572 AT G F+ + V Sbjct: 214 ATRGNIFIRQSV 225 >At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif Length = 177 Score = 28.3 bits (60), Expect = 4.8 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 392 +R+FGFV F E A A+ +G+ G+ + V A ++ Sbjct: 53 HRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPEK 93 >At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 460 Score = 27.9 bits (59), Expect = 6.3 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +1 Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258 ++++G +S +T E L DYF YG ++ Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVV 33 Score = 27.5 bits (58), Expect = 8.3 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 Query: 178 RIYVGALSDNTTVEELYDYFIQYG 249 +I+VG L + T EE +YF Q+G Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFG 134 >At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 460 Score = 27.9 bits (59), Expect = 6.3 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +1 Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258 ++++G +S +T E L DYF YG ++ Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVV 33 Score = 27.5 bits (58), Expect = 8.3 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 Query: 178 RIYVGALSDNTTVEELYDYFIQYG 249 +I+VG L + T EE +YF Q+G Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFG 134 >At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 448 Score = 27.9 bits (59), Expect = 6.3 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +1 Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258 ++++G +S +T E L DYF YG ++ Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVV 33 Score = 27.5 bits (58), Expect = 8.3 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 Query: 178 RIYVGALSDNTTVEELYDYFIQYG 249 +I+VG L + T EE +YF Q+G Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFG 134 >At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41 (RSP41) nearly identical to SP|P92966 Arginine/serine-rich splicing factor RSP41 {Arabidopsis thaliana} Length = 357 Score = 27.9 bits (59), Expect = 6.3 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +3 Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380 + RNF F+Q+ + A A+ N S K I V A Sbjct: 128 IRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYA 165 >At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41 (RSP41) nearly identical to SP|P92966 Arginine/serine-rich splicing factor RSP41 {Arabidopsis thaliana} Length = 356 Score = 27.9 bits (59), Expect = 6.3 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +3 Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380 + RNF F+Q+ + A A+ N S K I V A Sbjct: 128 IRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYA 165 >At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative DNA binding protein ACBF - Nicotiana tabacum, PID:g1899188 Length = 415 Score = 27.9 bits (59), Expect = 6.3 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 392 ++ +GFV+FA+ES A+ + NG + + A +K+ Sbjct: 214 SKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254 Score = 27.9 bits (59), Expect = 6.3 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +3 Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365 I + GFVQ+A + A+ A+ NG+ G++I Sbjct: 309 IPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSI 343 >At3g19320.1 68416.m02450 leucine-rich repeat family protein contains leucine-rich repeats, Pfam:PF00560; Length = 493 Score = 27.9 bits (59), Expect = 6.3 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -3 Query: 619 PRTPLPRGPKPTATASTSLIMNFWPVVALFKFLLK 515 P PLP P P S+ LI +PV+ F+ L++ Sbjct: 105 PPRPLPPPPPPPLHFSSPLIKKVYPVIKNFQTLIE 139 >At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing protein similar to SP|P42731 Polyadenylate-binding protein 2 (Poly(A) binding protein 2) (PABP 2) {Arabidopsis thaliana}; contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain Length = 423 Score = 27.9 bits (59), Expect = 6.3 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +3 Query: 282 GFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380 GFV+FA A++A++K G + I ++AA Sbjct: 226 GFVEFASAKEAENALEKKKGEYLQDGEIFLKAA 258 >At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 272 Score = 27.9 bits (59), Expect = 6.3 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +1 Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258 +I+VG L+ TT ++L YF Q+G+++ Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVV 39 >At2g21690.1 68415.m02580 RNA-binding protein, putative similar to Glycine-rich RNA-binding protein from {Sinapis alba} SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 117 Score = 27.9 bits (59), Expect = 6.3 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT 383 +R FGFV F EE S DAI + + K + V + T Sbjct: 47 SRRFGFVTFEEEKSMTDAIMIMDVEESRSKCVNVGSIT 84 >At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing protein low similarity to SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 181 Score = 27.9 bits (59), Expect = 6.3 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = +1 Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMMGL*LIEILDLCNSPK 303 ++YV LS TT + L D F Q+G ++ + ++ + + N PK Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMV-MDKVANRPK 118 >At1g49750.1 68414.m05579 leucine-rich repeat family protein contains leucine-rich repeats, Pfam:PF00560 Length = 494 Score = 27.9 bits (59), Expect = 6.3 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -3 Query: 622 APRTPLPRGPKPTATASTSLIMNFWPVVALFKFLL 518 AP P P P P ++SL+ +PV+ FK L+ Sbjct: 104 APPKPQPSPPTPDLPFASSLLKKVYPVLQRFKDLV 138 >At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 303 Score = 27.9 bits (59), Expect = 6.3 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395 + FV+F + A+DAI +G F G + V A RR Sbjct: 47 YAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRR 85 >At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 285 Score = 27.9 bits (59), Expect = 6.3 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395 + FV+F + A+DAI +G F G + V A RR Sbjct: 47 YAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRR 85 >At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 303 Score = 27.9 bits (59), Expect = 6.3 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395 + FV+F + A+DAI +G F G + V A RR Sbjct: 47 YAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRR 85 >At5g12480.1 68418.m01466 calmodulin-domain protein kinase isoform 7 (CPK7) identical to calmodulin-domain protein kinase CDPK isoform 7 [Arabidopsis thaliana] gi|1399277|gb|AAB03247 Length = 535 Score = 27.5 bits (58), Expect = 8.3 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +3 Query: 327 KKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDES 473 K A S+ K K D RR+VE + P+ P V+LKD+ +D++ Sbjct: 84 KYACKSISKKKLRTAVDIEDVRREVEIMKHMPKHPNVVSLKDSFEDDDA 132 >At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 363 Score = 27.5 bits (58), Expect = 8.3 Identities = 9/25 (36%), Positives = 17/25 (68%) Frame = +1 Query: 181 IYVGALSDNTTVEELYDYFIQYGKM 255 +YVG L+ ++++D+F YG+M Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEM 251 >At4g16280.1 68417.m02469 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 505 Score = 27.5 bits (58), Expect = 8.3 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 5/128 (3%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGS-VFKGKNIP--VRAATDKR-RDVETVTIYPEVPPA 437 +R GFV+++ + +A AI NG+ +G N P VR A KR + E+ E+ P Sbjct: 8 SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGES----REMAPP 63 Query: 438 VAL-KDTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFMMREVEAVAVGLGPRGKGV 614 V L + + N+G+++ V N R T + VG P G+ Sbjct: 64 VGLGSGPRFQASGPRPTSNFGDSSGDVSHTNPWRPATSRN----------VG-PPSNTGI 112 Query: 615 RGARSRGP 638 RGA S P Sbjct: 113 RGAGSDFP 120 >At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1 protein, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana}; cDNA NCBI_gi:15810292 supports a truncated version while protein evidence supports a longer model. Length = 278 Score = 27.5 bits (58), Expect = 8.3 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395 + FV+F + A DAI +G F G ++ V A RR Sbjct: 47 YAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGGRR 85 >At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1 protein, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana}; cDNA NCBI_gi:15810292 supports a truncated version while protein evidence supports a longer model. Length = 178 Score = 27.5 bits (58), Expect = 8.3 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395 + FV+F + A DAI +G F G ++ V A RR Sbjct: 47 YAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGGRR 85 >At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing protein similar to chloroplast RNA-binding protein cp33 [Arabidopsis thaliana] GI:681912; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 253 Score = 27.5 bits (58), Expect = 8.3 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = +3 Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371 +R FGF A ++K NG+ +G+ I V Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKV 149 >At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative similar to SP|Q43776 Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Lycopersicon esculentum}; contains Pfam profile PF00152: tRNA synthetases class II (D, K and N) Length = 626 Score = 27.5 bits (58), Expect = 8.3 Identities = 16/68 (23%), Positives = 30/68 (44%) Frame = +3 Query: 297 AEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESE 476 AE S+ A ++ ++ K + + + +R+D E + P A + K +DE Sbjct: 26 AESSAGDGAGPRSKNALKKEQKMKQKEEEKRRKDEEKAEKAKQAPKASSQKAVAADDEEM 85 Query: 477 EAYDNYGN 500 +A Y N Sbjct: 86 DATQYYEN 93 >At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF-1-beta, putative nearly identical to eEF-1beta [Arabidopsis thaliana] GI:398606 Length = 231 Score = 27.5 bits (58), Expect = 8.3 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +3 Query: 429 PPAVALKDTQMEDESEEAYDNYGNNNDMVFKRNLKRATT 545 PPA KDT E+E ++ D +G + K +RA + Sbjct: 92 PPAADSKDTAAEEEDDDDVDLFGEETEEEKKAAEERAAS 130 >At1g64340.1 68414.m07291 hypothetical protein Length = 265 Score = 27.5 bits (58), Expect = 8.3 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +1 Query: 295 SPKNQVHRMQ*KKLMVAYSKEKISLSEPQLIKDE 396 S KN + R + K+M Y K K+ + P+L +E Sbjct: 77 SGKNSIQRSENTKMMETYPKNKMVIMNPKLNTEE 110 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,315,413 Number of Sequences: 28952 Number of extensions: 263223 Number of successful extensions: 977 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 840 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 977 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1373722560 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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