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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0814
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23350.1 68415.m02788 polyadenylate-binding protein, putative...    41   8e-04
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat...    40   0.001
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat...    40   0.001
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t...    38   0.004
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    38   0.006
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)...    38   0.008
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative      37   0.010
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP...    36   0.018
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP...    36   0.018
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP...    36   0.018
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)...    36   0.018
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)...    36   0.018
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)       36   0.018
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ...    35   0.041
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative...    35   0.055
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ...    35   0.055
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative...    34   0.072
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative...    34   0.072
At5g51300.2 68418.m06360 splicing factor-related contains simila...    34   0.096
At5g51300.1 68418.m06359 splicing factor-related contains simila...    34   0.096
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ...    34   0.096
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ...    34   0.096
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    34   0.096
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ...    33   0.22 
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP...    33   0.22 
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to...    33   0.22 
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ...    32   0.29 
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ...    32   0.29 
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ...    32   0.29 
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi...    32   0.29 
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat...    32   0.29 
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat...    32   0.29 
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat...    32   0.29 
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33...    32   0.29 
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30...    32   0.39 
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ...    31   0.51 
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ...    31   0.51 
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ...    31   0.51 
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ...    31   0.51 
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ...    31   0.51 
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ...    31   0.51 
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative...    31   0.67 
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    31   0.67 
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ...    31   0.67 
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ...    31   0.67 
At5g05140.1 68418.m00545 transcription elongation factor-related...    31   0.89 
At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contai...    31   0.89 
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ...    31   0.89 
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t...    30   1.2  
At5g28823.1 68418.m03544 hypothetical protein                          30   1.6  
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein              30   1.6  
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)...    30   1.6  
At4g16280.3 68417.m02471 flowering time control protein / FCA ga...    30   1.6  
At4g16280.2 68417.m02470 flowering time control protein / FCA ga...    30   1.6  
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ...    29   2.1  
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative...    29   2.1  
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ...    29   2.1  
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ...    29   2.1  
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ...    29   2.1  
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ...    29   2.7  
At3g57530.1 68416.m06406 calcium-dependent protein kinase, putat...    29   2.7  
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ...    29   2.7  
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ...    29   2.7  
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ...    29   3.6  
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /...    29   3.6  
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /...    29   3.6  
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil...    29   3.6  
At2g47310.1 68415.m05906 flowering time control protein-related ...    29   3.6  
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p...    29   3.6  
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p...    29   3.6  
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS...    28   4.8  
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS...    28   4.8  
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k...    28   4.8  
At2g21410.1 68415.m02548 vacuolar proton ATPase, putative simila...    28   4.8  
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ...    28   4.8  
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ...    28   6.3  
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ...    28   6.3  
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ...    28   6.3  
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS...    28   6.3  
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS...    28   6.3  
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ...    28   6.3  
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    28   6.3  
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ...    28   6.3  
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ...    28   6.3  
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t...    28   6.3  
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ...    28   6.3  
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont...    28   6.3  
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    28   6.3  
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR...    28   6.3  
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    28   6.3  
At5g12480.1 68418.m01466 calmodulin-domain protein kinase isofor...    27   8.3  
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ...    27   8.3  
At4g16280.1 68417.m02469 flowering time control protein / FCA ga...    27   8.3  
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    27   8.3  
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR...    27   8.3  
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ...    27   8.3  
At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin...    27   8.3  
At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF...    27   8.3  
At1g64340.1 68414.m07291 hypothetical protein                          27   8.3  

>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
           PABP, putative
          Length = 662

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVR--AATDKRRDVETVTIYPEVPPAVA 443
           +R +GFVQF  E SA++AI+K NG V   K I V      ++R        +  V     
Sbjct: 173 SRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNV-YVKN 231

Query: 444 LKDTQMEDESEEAYDNYGNNNDMVFKRN 527
           L +   +DE +  +  YG+ +  V  R+
Sbjct: 232 LSEATTDDELKTTFGQYGSISSAVVMRD 259



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 243 IRENDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-RRDVETVTIY 419
           +R+ DG   +R FGFV F     A  A++  NG  F  K   V  A  K  R++E    Y
Sbjct: 257 MRDGDG--KSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRY 314

Query: 420 PE 425
            +
Sbjct: 315 EQ 316



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 181 IYVGALSDNTTVEELYDYFIQ 243
           +YVG L  N T  +LYDYF +
Sbjct: 48  LYVGDLDFNVTDSQLYDYFTE 68


>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana]; contains Pfam profile: PF00076
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 136

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           +R FGFV F+ E SA +AIK+ +G    G+ I V  AT++
Sbjct: 75  SRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114


>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana]; contains Pfam profile: PF00076
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 136

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           +R FGFV F+ E SA +AIK+ +G    G+ I V  AT++
Sbjct: 75  SRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114


>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
           RNA Binding Protein 47 [Nicotiana plumbaginifolia]
           GI:9663769, DNA binding protein ACBF GB:AAC49850 from
           [Nicotiana tabacum]; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 435

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +3

Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKN 362
           I V +  GFVQFA+  SA+DAI+  NG+V  GKN
Sbjct: 352 IPVGKGCGFVQFADRKSAEDAIESLNGTVI-GKN 384



 Score = 31.9 bits (69), Expect = 0.39
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 392
           ++ +GFV+F +E+    A+ + NG+    + + V  AT KR
Sbjct: 243 SKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKR 283



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 374
           +  +GFV+F   ++A++ ++  +GSV    + P R
Sbjct: 148 SEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFR 182


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATD 386
           +R +GFV F  E SA  AI   NG    G NI V  A D
Sbjct: 71  SRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKD 109


>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
           identical to GB:Q05196 from [Arabidopsis thaliana]
          Length = 668

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNI----PVRAATDKRRDVETVTIYPEVPPA 437
           ++ +GFVQF +E +AQ AI K NG +   K +     VR     R +   V  +  V   
Sbjct: 171 SKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVK 230

Query: 438 VALKDTQMEDESEEAYDNYGNNNDMVFKRNL---KRATTGQKFMMREVEAVAV 587
              K+   +DE ++ +  YG+ +  V  ++     R+     F+  E  AVAV
Sbjct: 231 NLPKEI-TDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 282



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVE 404
           +R+FGFV F    +A  A++K NG +  G+++       K+ D E
Sbjct: 264 SRSFGFVNFVSPEAAAVAVEKMNG-ISLGEDVLYVGRAQKKSDRE 307



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-RRDVETVTIYPEV 428
           ++R FGFV ++    A  A+K+ NG +   K + V  A  K  R     +++ ++
Sbjct: 366 LSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQI 420


>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
          Length = 425

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR-----RDVETVTIYP-EVP 431
           ++ +GFV+FAEES    A+ + NG     + + + AAT K+     +   T  +YP  VP
Sbjct: 157 SKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVP 216

Query: 432 PAVA 443
            AVA
Sbjct: 217 SAVA 220



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSV 347
           I   + +G+VQF    SA++A+++  G V
Sbjct: 268 IPATKGYGYVQFKTRPSAEEAVQRMQGQV 296


>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 92

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           +R FGFV F +E + +DAI++ NG    G+ I V  A  +
Sbjct: 46  SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85


>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 126

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           +R FGFV F +E + +DAI++ NG    G+ I V  A  +
Sbjct: 46  SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85


>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 169

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           +R FGFV F +E + +DAI++ NG    G+ I V  A  +
Sbjct: 46  SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85


>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 159

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           +R FGFV F +E + +DAI+  NG    G++I V  A  +
Sbjct: 48  SRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87


>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 176

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           +R FGFV F +E + +DAI+  NG    G++I V  A  +
Sbjct: 48  SRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87


>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
          Length = 660

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVR---AATDKRRDVETVTIYPEVPPAV 440
           ++ +GFVQF +E SAQ AI K NG +   K + V       ++ RD  T T         
Sbjct: 175 SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVK 234

Query: 441 ALKDTQMEDESEEAYDNYGNNNDMVFKRN 527
            L     EDE  + +  +G  +  V  R+
Sbjct: 235 NLPKEIGEDELRKTFGKFGVISSAVVMRD 263


>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
           protein similar to SP|Q14011 Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) {Homo
           sapiens}; contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 157

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATD 386
           + FGF+ F  E  AQ A+K  NG +  G+ I V  A +
Sbjct: 107 KGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAKE 144


>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
          Length = 671

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-RRDVETVTIYPEVPPAVAL 446
           ++ +GFVQ+  + +AQ AI K NG +   K + V     K +RD     +         L
Sbjct: 172 SKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNL 231

Query: 447 KDTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFM 560
            ++  ++E  + +  +G     V  R+ +  + G  F+
Sbjct: 232 SESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFV 269



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 255 DGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-RRDVE 404
           DG   ++ FGFV F     A  A+   NG  F  K   V  A  K  R+ E
Sbjct: 258 DGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETE 308


>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein ACBF GB:U90212 GI:1899187
           from [Nicotiana tabacum]
          Length = 445

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 18/34 (52%), Positives = 22/34 (64%)
 Frame = +3

Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKN 362
           I V +  GFVQFA   SA++AI   NG+V  GKN
Sbjct: 358 IPVGKGCGFVQFANRQSAEEAIGNLNGTVI-GKN 390



 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 392
           ++ +GFV+F +E+    A+ + NG+    + + V  AT KR
Sbjct: 254 SKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKR 294


>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
           PABP, putative 
          Length = 609

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 25/97 (25%), Positives = 40/97 (41%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALK 449
           +R +GFVQF +E +A  AI+  N ++   K I V     K   V+    Y  +       
Sbjct: 151 SRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDA 210

Query: 450 DTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFM 560
           D   ED   E +  +G    +   ++  R   G  F+
Sbjct: 211 DVS-EDLLREKFAEFGKIVSLAIAKDENRLCRGYAFV 246



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           ++ FGFV F+    A DA+K  +G +F GK + V  A  K
Sbjct: 343 SKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382


>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
           PABP, putative non-consensus splice donor TA at exon 1;
           similar to polyadenylate-binding protein
           (poly(A)-binding protein) from [Triticum aestivum]
           GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
           thaliana} SP|P42731; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 407

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +3

Query: 255 DGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVE 404
           DG   +R FGFV F +  +A  AI+K NG V   K + V  A  K    E
Sbjct: 153 DGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTE 202



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-RRDVETVTIYPEVPPA 437
           +++  GFV+F+    A  A+ K NG +   K I V  A  K +  +   T +   PP+
Sbjct: 261 ISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQFNNPPPS 318



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
           V++ +GFVQF  + S   A    NG++ + ++I V
Sbjct: 69  VSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHV 103


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +3

Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
           +++ +GFV++A+   A  A++  NG  F+G+ + VR A
Sbjct: 519 LSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +3

Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
           +++ +GFV++A+   A  A++  NG  F+G+ + VR A
Sbjct: 519 LSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556


>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 358

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
 Frame = +3

Query: 273 RNFGFVQFAEESSAQDAIKKA---NGSVFKGK-NIPVRAATDKRRDVETVTIYPEVPPAV 440
           R FGF+ FA+ S     I+     NG   + K  IP  A  ++ +D++T  I+       
Sbjct: 60  RGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIF-----VG 114

Query: 441 ALKDTQMEDESEEAYDNYGN-NNDMVFKRNLKRATTGQKFMMREVEAVAVGLGPRG 605
            +  T  EDE ++ +  YGN     V + +    + G  F++ + E V   L  +G
Sbjct: 115 GIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
           +I+VG +    T +EL D+F +YG ++
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVV 136


>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 231

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
 Frame = +3

Query: 273 RNFGFVQFAEESSAQDAIKKA---NGSVFKGK-NIPVRAATDKRRDVETVTIYPEVPPAV 440
           R FGF+ FA+ S     I+     NG   + K  IP  A  ++ +D++T  I+       
Sbjct: 60  RGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIF-----VG 114

Query: 441 ALKDTQMEDESEEAYDNYGN-NNDMVFKRNLKRATTGQKFMMREVEAVAVGLGPRG 605
            +  T  EDE ++ +  YGN     V + +    + G  F++ + E V   L  +G
Sbjct: 115 GIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
           +I+VG +    T +EL D+F +YG ++
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVV 136


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 252 NDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           N G   +R F FV+FA +     AI+  NGS   G+ I V+ A  +
Sbjct: 54  NKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHR 99



 Score = 30.7 bits (66), Expect = 0.89
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           + F FV+F  +  A +AIKK NG +F  + I V  A  K
Sbjct: 372 KGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPK 410


>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 289

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
           +R FGFVQ + E+    AI   +G   +G+ I V  A ++ R
Sbjct: 247 SRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTR 288


>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 105

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGS 344
           +R FGFV F +E + +DAI++ NGS
Sbjct: 46  SRGFGFVTFKDEKAMRDAIEEMNGS 70


>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
           RNA binding protein GI:18181938 from (Arabidopsis
           thaliana); contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
           domain 15450911 gb AY054536.1
          Length = 360

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 178 RIYVGALSDNTTVEELYDYFIQYGK 252
           +I+VG LS NTT EE   YF ++G+
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGR 145


>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
           protein low similarity to glycine-rich RNA-binding
           protein [Euphorbia esula] GI:2645699; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 337

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 252 NDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           ND  +  + +GFV F+   SA DAI+  +G    G+ + V   T +
Sbjct: 40  NDRSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAVRVNDVTTR 85


>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
           similarity to RNA-binding protein from [Nicotiana
           tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
           [Solanum tuberosum] GI:15822705; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 146

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 392
           ++ FGFV FA    AQ A+ + NG    G+ I V  A  K+
Sbjct: 74  SKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQ 114


>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
           similar to GB:CAB75429 (GI:6996560) from [Nicotiana
           plumbaginifolia], contains Pfam profiles: PF00076 RNA
           recognition motif (3 copies)
          Length = 427

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALK 449
           +R FGFV F  +  AQ AI + NG     + I    AT K        +  +    V L 
Sbjct: 184 SRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWAT-KGATSGDDKLSSDGKSVVELT 242

Query: 450 DTQMEDESEEAYDNYGNNNDM---VFKRNLKRATTGQKFMMREVEAVAVGL 593
               ED  E   +    NN     V+  NL    T Q  + R   A+  G+
Sbjct: 243 TGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVT-QLDLHRYFHALGAGV 292


>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
           to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
           associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
           splicing factor SF3b 49 kDa subunit) {Homo sapiens};
           contains Pfam profile PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 363

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVE 404
           +++N+GF+++  E  A  AIK  N     GK I V  A+  ++ ++
Sbjct: 64  LHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLD 109


>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein from {Daucus
           carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
           napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 185

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRA 377
           ++ F FV F +E S + AI + NG    G+NI  +A
Sbjct: 84  SKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITAQA 119


>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           R FGF+ F +   A DAIK  +G     K I V  A  K
Sbjct: 53  RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91


>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           R FGF+ F +   A DAIK  +G     K I V  A  K
Sbjct: 53  RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91


>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
           nearly identical to SC35-like splicing factor SCL33, 33
           kD [Arabidopsis thaliana] GI:9843659
          Length = 220

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
           R FGFVQF + + A DA    +G +  G+ + V  A + R+
Sbjct: 77  RGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRK 117


>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
           nearly identical to SC35-like splicing factor SCL30, 30
           kD [Arabidopsis thaliana] GI:9843657;
           Serine/arginine-rich protein/putative splicing factor,
           Arabidopdis thaliana, EMBL:AF099940; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTI 416
           R F FV+F +   A +A +  N   F G+ I V  A++ R+  E + +
Sbjct: 88  RGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESRKRPEEMRV 135


>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 261

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = +1

Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
           +++VG L+ +T  E +YD+FI+YG ++
Sbjct: 18  KVFVGGLAWDTHKEAMYDHFIKYGDIL 44


>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 430

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT 383
           +R FGFV F  +  AQ AI + NG     + I    AT
Sbjct: 192 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 229


>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 426

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT 383
           +R FGFV F  +  AQ AI + NG     + I    AT
Sbjct: 188 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 225


>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 434

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSV 347
           I V +  GFVQF    +A++A++K NG+V
Sbjct: 337 IPVGKGCGFVQFVNRPNAEEALEKLNGTV 365


>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 432

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSV 347
           I V +  GFVQF    +A++A++K NG+V
Sbjct: 335 IPVGKGCGFVQFVNRPNAEEALEKLNGTV 363


>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 146

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 166 TAHLRIYVGALSDNTTVEELYDYFIQYGKMM 258
           T H +++VG L+  T  +E+  YF Q+G+++
Sbjct: 14  TTHTKVFVGGLAWETPTDEMRRYFDQFGEIL 44


>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
           PABP, putative similar to polyadenylate-binding protein
           (poly(A)-binding protein) from {Arabidopsis thaliana}
           SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
           SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 537

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVA-L 446
           ++ FGFVQF  E SA  A    +GS+  GK + V    +K                V  L
Sbjct: 150 SKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNL 209

Query: 447 KDTQMEDESEEAYDNYGNNNDMVFKRN 527
            +T  +D     +  YG  + +V  R+
Sbjct: 210 IETVTDDCLHTLFSQYGTVSSVVVMRD 236



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 255 DGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA--TDKRRDV 401
           DG+  +R FGFV F    +A+ A++   G     K + V  A   D+RR++
Sbjct: 236 DGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREM 286


>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
           almost identical to SC35-like splicing factor SCL30a
           GI:9843661 from [Arabidopsis thaliana]; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
           R FGF+QF + + A +A  + +G +  G+ + V  A + R+
Sbjct: 78  RGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 118


>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           SP|P19684 33 kDa ribonucleoprotein, chloroplast
           precursor {Nicotiana sylvestris}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 308

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 374
           +GFV FA    A++AI K NG    G+ I ++
Sbjct: 238 YGFVSFATREEAENAITKLNGKEIMGRPITLK 269


>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
           protein
          Length = 561

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 231 LLHTIRENDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           L+   R+  G+   + FGFVQFA    A++A+         G+ I V A TD+
Sbjct: 313 LVQVPRDETGLC--KGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSAVTDQ 363


>At5g05140.1 68418.m00545 transcription elongation factor-related
           low similarity to transcription elongation factor
           TFIIS.h [Mus musculus] GI:3288547, elongin A [Mus
           musculus] GI:6009624
          Length = 436

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 321 AIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDE 470
           +IK ++ + F G   PV+ +T++R   ETV+++    P +  K    E +
Sbjct: 312 SIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQK 361


>At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contains
           weak similarity to Ubiquitin-protein ligase E3 Mdm2 (EC
           6.3.2.-) (p53-binding protein Mdm2) (Oncoprotein Mdm2)
           (Double minute 2 protein) (Swiss-Prot:P23804) [Mus
           musculus]
          Length = 785

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +3

Query: 384 DKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDMVFKRNLK 533
           +++ + + V +    P    ++D Q+ED ++       +N+D+VFK+NLK
Sbjct: 120 NRKLNKDMVAVVSRCPTCATMQDHQIEDRNQR------HNDDVVFKKNLK 163


>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
           similar to gb|U90212 DNA binding protein ACBF from
           Nicotiana tabacum and contains 3 PF|00076 RNA
           recognition motif domains. ESTs gb|T44278, gb|R65195,
           gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
           gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
          Length = 405

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365
           I   +  GFVQF+E+S A++A++  NG    G  +
Sbjct: 292 IPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTV 326


>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
           RNA-binding protein from [Nicotiana tabacum]
           GI:15822703, [Nicotiana sylvestris] GI:624925; contains
           Pfam profile: PF00076 RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 143

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
           +R FGFV FAEE  A  A    +G    G+ + +  A ++ R
Sbjct: 81  SRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALERVR 122


>At5g28823.1 68418.m03544 hypothetical protein
          Length = 568

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 450 DTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFMMREVE----AVAVGLGPRGKGVR 617
           D  + ++S     +   ++D     NLK   +G+    R ++    A+ +G G RG+G R
Sbjct: 497 DVVLREDSNMVDSDKSEDSDEDLIMNLKSTFSGKHLQDRPLQFPNKAINIGHGGRGRGRR 556

Query: 618 GARSRG 635
           G  +RG
Sbjct: 557 GRGNRG 562


>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
          Length = 310

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           +R FGF+ FA+  +  ++I++ +G  F  + I V  A  K
Sbjct: 47  SRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPK 86


>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
           non-consensus TA donor splice site at exon 2,
           polyadenylate-binding protein - Triticum aestivum
           (common wheat),PIR:T06979
          Length = 443

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +3

Query: 255 DGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV-RAATDKRRDVETVTIYPE 425
           DG   ++ FGFV F     A  A++  NG  F  K   V RA     R+ E    Y +
Sbjct: 63  DGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 120



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 148 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKM 255
           D     T    +YV  L+++TT ++L + F +YGK+
Sbjct: 20  DSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKI 55


>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 533

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/53 (26%), Positives = 33/53 (62%)
 Frame = +1

Query: 118 MADNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKMMGL*LIE 276
           ++D+ +    D+  +S+  ++++VG++    T EE+  YF Q+G ++ + LI+
Sbjct: 102 ISDHGSFTGTDVSDRSST-VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGS-VFKGKNIP--VRAATDKR-RDVETVTIYPEVPPA 437
           +R  GFV+++ + +A  AI   NG+   +G N P  VR A  KR +  E+     E+ P 
Sbjct: 250 SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGES----REMAPP 305

Query: 438 VAL-KDTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFMMREVEAVAVGLGPRGKGV 614
           V L    + +        N+G+++  V   N  R  T +           VG  P   G+
Sbjct: 306 VGLGSGPRFQASGPRPTSNFGDSSGDVSHTNPWRPATSRN----------VG-PPSNTGI 354

Query: 615 RGARSRGP 638
           RGA S  P
Sbjct: 355 RGAGSDFP 362


>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 747

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/53 (26%), Positives = 33/53 (62%)
 Frame = +1

Query: 118 MADNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKMMGL*LIE 276
           ++D+ +    D+  +S+  ++++VG++    T EE+  YF Q+G ++ + LI+
Sbjct: 102 ISDHGSFTGTDVSDRSST-VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGS-VFKGKNIP--VRAATDKR-RDVETVTIYPEVPPA 437
           +R  GFV+++ + +A  AI   NG+   +G N P  VR A  KR +  E+     E+ P 
Sbjct: 250 SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGES----REMAPP 305

Query: 438 VAL-KDTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFMMREVEAVAVGLGPRGKGV 614
           V L    + +        N+G+++  V   N  R  T +           VG  P   G+
Sbjct: 306 VGLGSGPRFQASGPRPTSNFGDSSGDVSHTNPWRPATSRN----------VG-PPSNTGI 354

Query: 615 RGARSRGP 638
           RGA S  P
Sbjct: 355 RGAGSDFP 362


>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
           contains similarity to polyadenylate-binding protein 5
          Length = 387

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 282 GFVQFAEESSAQDAIKKANGSVFKGKNI 365
           GFVQ+A ++SA+ A+   NG+   G++I
Sbjct: 298 GFVQYANKASAEHALSVLNGTQLGGQSI 325



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           ++ +GFV+FA+E+    A+ + NG     + + +  A +K
Sbjct: 195 SKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANK 234


>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GI:7673355 from [Nicotiana tabacum]; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 620

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 282 GFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
           GFV+FA  + A++A++K NG       I +  A  K
Sbjct: 170 GFVEFASVNEAEEALQKKNGECLDNNKIFLDVANKK 205



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 282 GFVQFAEESSAQDAIKKANGSVFKGKNI 365
           GFV+FA  + AQ A++K NG   + + I
Sbjct: 532 GFVEFASVNEAQKALQKMNGENLRSREI 559


>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 783

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 243 IRENDGIIVNRNFGFVQFAEESSAQDAIKKANGS 344
           +R NDG   +R FGF+ F     AQ AIK  N +
Sbjct: 1   MRSNDG--KSRQFGFIGFRSAQEAQQAIKYFNNT 32



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRD 398
           ++  +GFV+F    +A    +   G+V  G  + +R   +KR D
Sbjct: 613 LSSGYGFVEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSD 656


>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
           protein similar to nucleolin protein; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 495

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
           R+FGFV +AE SSA  A+K        G+ + V
Sbjct: 331 RDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 363


>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp29, putative similar to
           SP|Q43349 29 kDa ribonucleoprotein, chloroplast
           precursor (RNA-binding protein cp29) {Arabidopsis
           thaliana}
          Length = 289

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
           ++ FGFV +      Q+AIK  +G+   G+ I V  A
Sbjct: 244 SKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280


>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 172

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 374
           +G+V F  +  AQ A++  NG  F G+ I V+
Sbjct: 120 YGYVWFNSKEDAQSAVEAMNGKFFDGRFILVK 151


>At3g57530.1 68416.m06406 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calmodulin-domain protein
           kinase CDPK isoform 7 [Arabidopsis thaliana]
           gi|1399277|gb|AAB03247
          Length = 538

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 22/64 (34%), Positives = 27/64 (42%)
 Frame = +3

Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQ 458
           FG      +    D    A  S+ K K        D RR+VE +   PE P  V LK+T 
Sbjct: 74  FGVTYLCTDKETDDVF--ACKSILKKKLRTAVDIEDVRREVEIMRHMPEHPNVVTLKET- 130

Query: 459 MEDE 470
            EDE
Sbjct: 131 YEDE 134


>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 271

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 166 TAHLRIYVGALSDNTTVEELYDYFIQYGKMM 258
           T + +++VG L+  T  +E+  YF Q+G+++
Sbjct: 14  TTYTKVFVGGLAWETPTDEMRRYFEQFGEIL 44


>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 287

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 166 TAHLRIYVGALSDNTTVEELYDYFIQYGKMM 258
           T + +++VG L+  T  +E+  YF Q+G+++
Sbjct: 14  TTYTKVFVGGLAWETPTDEMRRYFEQFGEIL 44


>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 455

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 148 DMKQKSTAHL-RIYVGALSDNTTVEELYDYFIQYGKMM 258
           + K +S + L ++++G +S +T  E L +YF +YG ++
Sbjct: 5   EQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLV 42


>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 334

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
           ++ FGFV  +     Q AI   NG+   G+ I V  A
Sbjct: 289 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 325



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRA 377
           +R FGFV  +  +  + A ++ NG  F+G+ + V A
Sbjct: 139 SRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNA 174


>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 342

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
           ++ FGFV  +     Q AI   NG+   G+ I V  A
Sbjct: 297 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 333



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRA 377
           +R FGFV  +  +  + A ++ NG  F+G+ + V A
Sbjct: 139 SRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNA 174


>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
            protein / RNA recognition motif (RRM)-containing protein
            contains Pfam profiles PF00076: RNA recognition motif.
            (a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
            transport factor 2 (NTF2) domain
          Length = 1294

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/78 (29%), Positives = 36/78 (46%)
 Frame = +3

Query: 276  NFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDT 455
            ++GFV+F EE++AQ AI KA+      +++ V     KR D       P   P +  +  
Sbjct: 1116 SYGFVEFKEENAAQRAI-KASPVTIDLRSVYVE---KKRPDYIRYWDTPSTGPGIIYRSE 1171

Query: 456  QMEDESEEAYDNYGNNND 509
             M    +  Y N G N +
Sbjct: 1172 GMSVTKD--YGNKGGNEN 1187


>At2g47310.1 68415.m05906 flowering time control protein-related /
           FCA gamma-related 
          Length = 512

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +3

Query: 255 DGIIVNRNFGFVQFAEESSAQDAIKKANG-SVFKGKNIP--VRAATDKRRDVETVTIYPE 425
           D + + R + FVQF+ +  A  AIK  NG    +G + P  VR A  K+  +        
Sbjct: 241 DDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGSDQPLIVRFADPKKPRLGEQRSTFN 300

Query: 426 VPPAVALKDTQMEDESEEAYDN 491
            PPA+   D     +    ++N
Sbjct: 301 TPPAMQHFDPNWHSQPYPQWEN 322


>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
           putative similar to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 224

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
           + RNF FVQFA +  A  A+   + S    K + V  A
Sbjct: 101 MRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYA 138


>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
           putative similar to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 250

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
           + RNF FVQFA +  A  A+   + S    K + V  A
Sbjct: 127 MRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYA 164


>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
           (RSP40) identical to SP|P92965 Arginine/serine-rich
           splicing factor RSP40 {Arabidopsis thaliana}
          Length = 309

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
           + RNF F+Q+  +  A  A+  +N S    K I V  A
Sbjct: 88  IRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 125


>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
           (RSP40) identical to SP|P92965 Arginine/serine-rich
           splicing factor RSP40 {Arabidopsis thaliana}
          Length = 350

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
           + RNF F+Q+  +  A  A+  +N S    K I V  A
Sbjct: 129 IRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 166


>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
           putative 
          Length = 333

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 148 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKMMGL*LI 273
           D K     +  ++VG LS +TT + L +   +YG++  L L+
Sbjct: 55  DSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLV 96


>At2g21410.1 68415.m02548 vacuolar proton ATPase, putative similar
           to vacuolar proton ATPase 100-kDa subunit from
           Dictyostelium discoideum P|1384136|gb|AAB49621
          Length = 821

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = +3

Query: 372 RAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNY-----GNNNDMVFKRNLKR 536
           R+AT ++ ++ET  +  ++  A  L++ +  D +++    +          MVF+R L R
Sbjct: 154 RSATAQQSEIETEQVGEDLLEAPLLQEEKSVDPTKQVKLGFLTGLVPREKSMVFERILFR 213

Query: 537 ATTGQKFMMREV 572
           AT G  F+ + V
Sbjct: 214 ATRGNIFIRQSV 225


>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif
          Length = 177

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 392
           +R+FGFV F E   A  A+   +G+   G+ + V  A  ++
Sbjct: 53  HRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPEK 93


>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 460

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
           ++++G +S +T  E L DYF  YG ++
Sbjct: 7   KLFIGGISWDTDEERLRDYFSNYGDVV 33



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 178 RIYVGALSDNTTVEELYDYFIQYG 249
           +I+VG L  + T EE  +YF Q+G
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFG 134


>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 460

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
           ++++G +S +T  E L DYF  YG ++
Sbjct: 7   KLFIGGISWDTDEERLRDYFSNYGDVV 33



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 178 RIYVGALSDNTTVEELYDYFIQYG 249
           +I+VG L  + T EE  +YF Q+G
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFG 134


>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 448

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
           ++++G +S +T  E L DYF  YG ++
Sbjct: 7   KLFIGGISWDTDEERLRDYFSNYGDVV 33



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 178 RIYVGALSDNTTVEELYDYFIQYG 249
           +I+VG L  + T EE  +YF Q+G
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFG 134


>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 357

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
           + RNF F+Q+  +  A  A+   N S    K I V  A
Sbjct: 128 IRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYA 165


>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 356

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
           + RNF F+Q+  +  A  A+   N S    K I V  A
Sbjct: 128 IRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYA 165


>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
           DNA binding protein ACBF - Nicotiana tabacum,
           PID:g1899188
          Length = 415

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 392
           ++ +GFV+FA+ES    A+ + NG     + +    A +K+
Sbjct: 214 SKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365
           I   +  GFVQ+A  + A+ A+   NG+   G++I
Sbjct: 309 IPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSI 343


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 619 PRTPLPRGPKPTATASTSLIMNFWPVVALFKFLLK 515
           P  PLP  P P    S+ LI   +PV+  F+ L++
Sbjct: 105 PPRPLPPPPPPPLHFSSPLIKKVYPVIKNFQTLIE 139


>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
           protein similar to SP|P42731 Polyadenylate-binding
           protein 2 (Poly(A) binding protein 2) (PABP 2)
           {Arabidopsis thaliana}; contains INTERPRO:IPR000504
           RNA-binding region RNP-1 (RNA recognition motif) domain
          Length = 423

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 282 GFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
           GFV+FA    A++A++K  G   +   I ++AA
Sbjct: 226 GFVEFASAKEAENALEKKKGEYLQDGEIFLKAA 258


>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 272

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
           +I+VG L+  TT ++L  YF Q+G+++
Sbjct: 13  KIFVGNLTWRTTADDLRRYFEQFGQVV 39


>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
           Glycine-rich RNA-binding protein from {Sinapis alba}
           SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
           thaliana} SP|Q03251; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 117

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT 383
           +R FGFV F EE S  DAI   +    + K + V + T
Sbjct: 47  SRRFGFVTFEEEKSMTDAIMIMDVEESRSKCVNVGSIT 84


>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
           protein low similarity to SP|Q03251 Glycine-rich
           RNA-binding protein 8 (CCR1 protein) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 181

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMMGL*LIEILDLCNSPK 303
           ++YV  LS  TT + L D F Q+G ++ + ++ +  + N PK
Sbjct: 78  KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMV-MDKVANRPK 118


>At1g49750.1 68414.m05579 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560
          Length = 494

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 622 APRTPLPRGPKPTATASTSLIMNFWPVVALFKFLL 518
           AP  P P  P P    ++SL+   +PV+  FK L+
Sbjct: 104 APPKPQPSPPTPDLPFASSLLKKVYPVLQRFKDLV 138


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
           + FV+F +   A+DAI   +G  F G  + V  A   RR
Sbjct: 47  YAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRR 85


>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 285

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
           + FV+F +   A+DAI   +G  F G  + V  A   RR
Sbjct: 47  YAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRR 85


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
           + FV+F +   A+DAI   +G  F G  + V  A   RR
Sbjct: 47  YAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRR 85


>At5g12480.1 68418.m01466 calmodulin-domain protein kinase isoform 7
           (CPK7) identical to calmodulin-domain protein kinase
           CDPK isoform 7 [Arabidopsis thaliana]
           gi|1399277|gb|AAB03247
          Length = 535

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 327 KKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDES 473
           K A  S+ K K        D RR+VE +   P+ P  V+LKD+  +D++
Sbjct: 84  KYACKSISKKKLRTAVDIEDVRREVEIMKHMPKHPNVVSLKDSFEDDDA 132


>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 363

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 181 IYVGALSDNTTVEELYDYFIQYGKM 255
           +YVG L+     ++++D+F  YG+M
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEM 251


>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 505

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGS-VFKGKNIP--VRAATDKR-RDVETVTIYPEVPPA 437
           +R  GFV+++ + +A  AI   NG+   +G N P  VR A  KR +  E+     E+ P 
Sbjct: 8   SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGES----REMAPP 63

Query: 438 VAL-KDTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFMMREVEAVAVGLGPRGKGV 614
           V L    + +        N+G+++  V   N  R  T +           VG  P   G+
Sbjct: 64  VGLGSGPRFQASGPRPTSNFGDSSGDVSHTNPWRPATSRN----------VG-PPSNTGI 112

Query: 615 RGARSRGP 638
           RGA S  P
Sbjct: 113 RGAGSDFP 120


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
           + FV+F +   A DAI   +G  F G ++ V  A   RR
Sbjct: 47  YAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGGRR 85


>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 178

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
           + FV+F +   A DAI   +G  F G ++ V  A   RR
Sbjct: 47  YAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGGRR 85


>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
           protein similar to chloroplast RNA-binding protein cp33
           [Arabidopsis thaliana] GI:681912; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 253

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
           +R FGF        A   ++K NG+  +G+ I V
Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKV 149


>At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative /
           lysine--tRNA ligase, putative similar to SP|Q43776
           Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)
           {Lycopersicon esculentum}; contains Pfam profile
           PF00152: tRNA synthetases class II (D, K and N)
          Length = 626

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = +3

Query: 297 AEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESE 476
           AE S+   A  ++  ++ K + +  +    +R+D E      + P A + K    +DE  
Sbjct: 26  AESSAGDGAGPRSKNALKKEQKMKQKEEEKRRKDEEKAEKAKQAPKASSQKAVAADDEEM 85

Query: 477 EAYDNYGN 500
           +A   Y N
Sbjct: 86  DATQYYEN 93


>At2g18110.1 68415.m02105 elongation factor 1-beta, putative /
           EF-1-beta, putative nearly identical to eEF-1beta
           [Arabidopsis thaliana] GI:398606
          Length = 231

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 429 PPAVALKDTQMEDESEEAYDNYGNNNDMVFKRNLKRATT 545
           PPA   KDT  E+E ++  D +G   +   K   +RA +
Sbjct: 92  PPAADSKDTAAEEEDDDDVDLFGEETEEEKKAAEERAAS 130


>At1g64340.1 68414.m07291 hypothetical protein
          Length = 265

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 295 SPKNQVHRMQ*KKLMVAYSKEKISLSEPQLIKDE 396
           S KN + R +  K+M  Y K K+ +  P+L  +E
Sbjct: 77  SGKNSIQRSENTKMMETYPKNKMVIMNPKLNTEE 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,315,413
Number of Sequences: 28952
Number of extensions: 263223
Number of successful extensions: 977
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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