Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0814
(657 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 41 8e-04
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 40 0.001
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 40 0.001
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 38 0.004
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 38 0.006
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.008
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 37 0.010
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 36 0.018
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 36 0.018
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 36 0.018
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 36 0.018
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 36 0.018
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 36 0.018
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.041
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 35 0.055
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 35 0.055
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 34 0.072
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 34 0.072
At5g51300.2 68418.m06360 splicing factor-related contains simila... 34 0.096
At5g51300.1 68418.m06359 splicing factor-related contains simila... 34 0.096
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 34 0.096
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 34 0.096
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 34 0.096
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 33 0.22
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.22
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 33 0.22
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 32 0.29
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 32 0.29
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 32 0.29
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 32 0.29
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 32 0.29
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 32 0.29
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 32 0.29
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 32 0.29
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 32 0.39
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 31 0.51
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 31 0.51
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 31 0.51
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 31 0.51
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 31 0.51
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 31 0.51
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 31 0.67
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 31 0.67
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 31 0.67
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 31 0.67
At5g05140.1 68418.m00545 transcription elongation factor-related... 31 0.89
At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contai... 31 0.89
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 31 0.89
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 30 1.2
At5g28823.1 68418.m03544 hypothetical protein 30 1.6
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 30 1.6
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 30 1.6
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 30 1.6
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 30 1.6
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 2.1
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 29 2.1
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 2.1
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 29 2.1
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 29 2.1
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 29 2.7
At3g57530.1 68416.m06406 calcium-dependent protein kinase, putat... 29 2.7
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 29 2.7
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 29 2.7
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 29 3.6
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 29 3.6
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 29 3.6
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 29 3.6
At2g47310.1 68415.m05906 flowering time control protein-related ... 29 3.6
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 29 3.6
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 3.6
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 28 4.8
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 28 4.8
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 28 4.8
At2g21410.1 68415.m02548 vacuolar proton ATPase, putative simila... 28 4.8
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 28 4.8
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 28 6.3
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 28 6.3
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 28 6.3
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 28 6.3
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 28 6.3
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 28 6.3
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 28 6.3
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 28 6.3
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 28 6.3
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 28 6.3
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 28 6.3
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont... 28 6.3
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.3
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.3
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.3
At5g12480.1 68418.m01466 calmodulin-domain protein kinase isofor... 27 8.3
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 27 8.3
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 27 8.3
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 27 8.3
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 27 8.3
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 27 8.3
At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin... 27 8.3
At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF... 27 8.3
At1g64340.1 68414.m07291 hypothetical protein 27 8.3
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 40.7 bits (91), Expect = 8e-04
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVR--AATDKRRDVETVTIYPEVPPAVA 443
+R +GFVQF E SA++AI+K NG V K I V ++R + V
Sbjct: 173 SRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNV-YVKN 231
Query: 444 LKDTQMEDESEEAYDNYGNNNDMVFKRN 527
L + +DE + + YG+ + V R+
Sbjct: 232 LSEATTDDELKTTFGQYGSISSAVVMRD 259
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 243 IRENDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-RRDVETVTIY 419
+R+ DG +R FGFV F A A++ NG F K V A K R++E Y
Sbjct: 257 MRDGDG--KSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRY 314
Query: 420 PE 425
+
Sbjct: 315 EQ 316
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 181 IYVGALSDNTTVEELYDYFIQ 243
+YVG L N T +LYDYF +
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTE 68
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
+R FGFV F+ E SA +AIK+ +G G+ I V AT++
Sbjct: 75 SRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
+R FGFV F+ E SA +AIK+ +G G+ I V AT++
Sbjct: 75 SRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +3
Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKN 362
I V + GFVQFA+ SA+DAI+ NG+V GKN
Sbjct: 352 IPVGKGCGFVQFADRKSAEDAIESLNGTVI-GKN 384
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 392
++ +GFV+F +E+ A+ + NG+ + + V AT KR
Sbjct: 243 SKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKR 283
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 374
+ +GFV+F ++A++ ++ +GSV + P R
Sbjct: 148 SEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFR 182
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATD 386
+R +GFV F E SA AI NG G NI V A D
Sbjct: 71 SRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKD 109
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.5 bits (83), Expect = 0.008
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNI----PVRAATDKRRDVETVTIYPEVPPA 437
++ +GFVQF +E +AQ AI K NG + K + VR R + V + V
Sbjct: 171 SKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVK 230
Query: 438 VALKDTQMEDESEEAYDNYGNNNDMVFKRNL---KRATTGQKFMMREVEAVAV 587
K+ +DE ++ + YG+ + V ++ R+ F+ E AVAV
Sbjct: 231 NLPKEI-TDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 282
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVE 404
+R+FGFV F +A A++K NG + G+++ K+ D E
Sbjct: 264 SRSFGFVNFVSPEAAAVAVEKMNG-ISLGEDVLYVGRAQKKSDRE 307
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-RRDVETVTIYPEV 428
++R FGFV ++ A A+K+ NG + K + V A K R +++ ++
Sbjct: 366 LSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQI 420
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 37.1 bits (82), Expect = 0.010
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR-----RDVETVTIYP-EVP 431
++ +GFV+FAEES A+ + NG + + + AAT K+ + T +YP VP
Sbjct: 157 SKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVP 216
Query: 432 PAVA 443
AVA
Sbjct: 217 SAVA 220
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSV 347
I + +G+VQF SA++A+++ G V
Sbjct: 268 IPATKGYGYVQFKTRPSAEEAVQRMQGQV 296
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
+R FGFV F +E + +DAI++ NG G+ I V A +
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
+R FGFV F +E + +DAI++ NG G+ I V A +
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
+R FGFV F +E + +DAI++ NG G+ I V A +
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
+R FGFV F +E + +DAI+ NG G++I V A +
Sbjct: 48 SRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
+R FGFV F +E + +DAI+ NG G++I V A +
Sbjct: 48 SRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 36.3 bits (80), Expect = 0.018
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVR---AATDKRRDVETVTIYPEVPPAV 440
++ +GFVQF +E SAQ AI K NG + K + V ++ RD T T
Sbjct: 175 SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVK 234
Query: 441 ALKDTQMEDESEEAYDNYGNNNDMVFKRN 527
L EDE + + +G + V R+
Sbjct: 235 NLPKEIGEDELRKTFGKFGVISSAVVMRD 263
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATD 386
+ FGF+ F E AQ A+K NG + G+ I V A +
Sbjct: 107 KGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAKE 144
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 34.7 bits (76), Expect = 0.055
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-RRDVETVTIYPEVPPAVAL 446
++ +GFVQ+ + +AQ AI K NG + K + V K +RD + L
Sbjct: 172 SKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNL 231
Query: 447 KDTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFM 560
++ ++E + + +G V R+ + + G F+
Sbjct: 232 SESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFV 269
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 255 DGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-RRDVE 404
DG ++ FGFV F A A+ NG F K V A K R+ E
Sbjct: 258 DGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETE 308
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 34.7 bits (76), Expect = 0.055
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +3
Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKN 362
I V + GFVQFA SA++AI NG+V GKN
Sbjct: 358 IPVGKGCGFVQFANRQSAEEAIGNLNGTVI-GKN 390
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 392
++ +GFV+F +E+ A+ + NG+ + + V AT KR
Sbjct: 254 SKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKR 294
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 34.3 bits (75), Expect = 0.072
Identities = 25/97 (25%), Positives = 40/97 (41%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALK 449
+R +GFVQF +E +A AI+ N ++ K I V K V+ Y +
Sbjct: 151 SRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDA 210
Query: 450 DTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFM 560
D ED E + +G + ++ R G F+
Sbjct: 211 DVS-EDLLREKFAEFGKIVSLAIAKDENRLCRGYAFV 246
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
++ FGFV F+ A DA+K +G +F GK + V A K
Sbjct: 343 SKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 34.3 bits (75), Expect = 0.072
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = +3
Query: 255 DGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVE 404
DG +R FGFV F + +A AI+K NG V K + V A K E
Sbjct: 153 DGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTE 202
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-RRDVETVTIYPEVPPA 437
+++ GFV+F+ A A+ K NG + K I V A K + + T + PP+
Sbjct: 261 ISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQFNNPPPS 318
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
V++ +GFVQF + S A NG++ + ++I V
Sbjct: 69 VSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHV 103
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 33.9 bits (74), Expect = 0.096
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
+++ +GFV++A+ A A++ NG F+G+ + VR A
Sbjct: 519 LSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 33.9 bits (74), Expect = 0.096
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
+++ +GFV++A+ A A++ NG F+G+ + VR A
Sbjct: 519 LSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 33.9 bits (74), Expect = 0.096
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKA---NGSVFKGK-NIPVRAATDKRRDVETVTIYPEVPPAV 440
R FGF+ FA+ S I+ NG + K IP A ++ +D++T I+
Sbjct: 60 RGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIF-----VG 114
Query: 441 ALKDTQMEDESEEAYDNYGN-NNDMVFKRNLKRATTGQKFMMREVEAVAVGLGPRG 605
+ T EDE ++ + YGN V + + + G F++ + E V L +G
Sbjct: 115 GIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
+I+VG + T +EL D+F +YG ++
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVV 136
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 33.9 bits (74), Expect = 0.096
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKA---NGSVFKGK-NIPVRAATDKRRDVETVTIYPEVPPAV 440
R FGF+ FA+ S I+ NG + K IP A ++ +D++T I+
Sbjct: 60 RGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIF-----VG 114
Query: 441 ALKDTQMEDESEEAYDNYGN-NNDMVFKRNLKRATTGQKFMMREVEAVAVGLGPRG 605
+ T EDE ++ + YGN V + + + G F++ + E V L +G
Sbjct: 115 GIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
+I+VG + T +EL D+F +YG ++
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVV 136
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 33.9 bits (74), Expect = 0.096
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 252 NDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
N G +R F FV+FA + AI+ NGS G+ I V+ A +
Sbjct: 54 NKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHR 99
Score = 30.7 bits (66), Expect = 0.89
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
+ F FV+F + A +AIKK NG +F + I V A K
Sbjct: 372 KGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPK 410
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
+R FGFVQ + E+ AI +G +G+ I V A ++ R
Sbjct: 247 SRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTR 288
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGS 344
+R FGFV F +E + +DAI++ NGS
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGS 70
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGK 252
+I+VG LS NTT EE YF ++G+
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGR 145
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 252 NDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
ND + + +GFV F+ SA DAI+ +G G+ + V T +
Sbjct: 40 NDRSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAVRVNDVTTR 85
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 392
++ FGFV FA AQ A+ + NG G+ I V A K+
Sbjct: 74 SKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQ 114
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 32.3 bits (70), Expect = 0.29
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALK 449
+R FGFV F + AQ AI + NG + I AT K + + V L
Sbjct: 184 SRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWAT-KGATSGDDKLSSDGKSVVELT 242
Query: 450 DTQMEDESEEAYDNYGNNNDM---VFKRNLKRATTGQKFMMREVEAVAVGL 593
ED E + NN V+ NL T Q + R A+ G+
Sbjct: 243 TGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVT-QLDLHRYFHALGAGV 292
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVE 404
+++N+GF+++ E A AIK N GK I V A+ ++ ++
Sbjct: 64 LHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLD 109
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRA 377
++ F FV F +E S + AI + NG G+NI +A
Sbjct: 84 SKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITAQA 119
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
R FGF+ F + A DAIK +G K I V A K
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
R FGF+ F + A DAIK +G K I V A K
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
R FGFVQF + + A DA +G + G+ + V A + R+
Sbjct: 77 RGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRK 117
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTI 416
R F FV+F + A +A + N F G+ I V A++ R+ E + +
Sbjct: 88 RGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESRKRPEEMRV 135
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 31.5 bits (68), Expect = 0.51
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
+++VG L+ +T E +YD+FI+YG ++
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDIL 44
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT 383
+R FGFV F + AQ AI + NG + I AT
Sbjct: 192 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 229
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT 383
+R FGFV F + AQ AI + NG + I AT
Sbjct: 188 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 225
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSV 347
I V + GFVQF +A++A++K NG+V
Sbjct: 337 IPVGKGCGFVQFVNRPNAEEALEKLNGTV 365
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSV 347
I V + GFVQF +A++A++K NG+V
Sbjct: 335 IPVGKGCGFVQFVNRPNAEEALEKLNGTV 363
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 31.5 bits (68), Expect = 0.51
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 166 TAHLRIYVGALSDNTTVEELYDYFIQYGKMM 258
T H +++VG L+ T +E+ YF Q+G+++
Sbjct: 14 TTHTKVFVGGLAWETPTDEMRRYFDQFGEIL 44
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 31.1 bits (67), Expect = 0.67
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVA-L 446
++ FGFVQF E SA A +GS+ GK + V +K V L
Sbjct: 150 SKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNL 209
Query: 447 KDTQMEDESEEAYDNYGNNNDMVFKRN 527
+T +D + YG + +V R+
Sbjct: 210 IETVTDDCLHTLFSQYGTVSSVVVMRD 236
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 255 DGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA--TDKRRDV 401
DG+ +R FGFV F +A+ A++ G K + V A D+RR++
Sbjct: 236 DGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREM 286
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
R FGF+QF + + A +A + +G + G+ + V A + R+
Sbjct: 78 RGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 118
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 374
+GFV FA A++AI K NG G+ I ++
Sbjct: 238 YGFVSFATREEAENAITKLNGKEIMGRPITLK 269
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 31.1 bits (67), Expect = 0.67
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 231 LLHTIRENDGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
L+ R+ G+ + FGFVQFA A++A+ G+ I V A TD+
Sbjct: 313 LVQVPRDETGLC--KGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSAVTDQ 363
>At5g05140.1 68418.m00545 transcription elongation factor-related
low similarity to transcription elongation factor
TFIIS.h [Mus musculus] GI:3288547, elongin A [Mus
musculus] GI:6009624
Length = 436
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +3
Query: 321 AIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDE 470
+IK ++ + F G PV+ +T++R ETV+++ P + K E +
Sbjct: 312 SIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQK 361
>At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contains
weak similarity to Ubiquitin-protein ligase E3 Mdm2 (EC
6.3.2.-) (p53-binding protein Mdm2) (Oncoprotein Mdm2)
(Double minute 2 protein) (Swiss-Prot:P23804) [Mus
musculus]
Length = 785
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +3
Query: 384 DKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDMVFKRNLK 533
+++ + + V + P ++D Q+ED ++ +N+D+VFK+NLK
Sbjct: 120 NRKLNKDMVAVVSRCPTCATMQDHQIEDRNQR------HNDDVVFKKNLK 163
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365
I + GFVQF+E+S A++A++ NG G +
Sbjct: 292 IPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTV 326
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
+R FGFV FAEE A A +G G+ + + A ++ R
Sbjct: 81 SRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALERVR 122
>At5g28823.1 68418.m03544 hypothetical protein
Length = 568
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 450 DTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFMMREVE----AVAVGLGPRGKGVR 617
D + ++S + ++D NLK +G+ R ++ A+ +G G RG+G R
Sbjct: 497 DVVLREDSNMVDSDKSEDSDEDLIMNLKSTFSGKHLQDRPLQFPNKAINIGHGGRGRGRR 556
Query: 618 GARSRG 635
G +RG
Sbjct: 557 GRGNRG 562
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
+R FGF+ FA+ + ++I++ +G F + I V A K
Sbjct: 47 SRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPK 86
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 255 DGIIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV-RAATDKRRDVETVTIYPE 425
DG ++ FGFV F A A++ NG F K V RA R+ E Y +
Sbjct: 63 DGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 120
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 148 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKM 255
D T +YV L+++TT ++L + F +YGK+
Sbjct: 20 DSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKI 55
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/53 (26%), Positives = 33/53 (62%)
Frame = +1
Query: 118 MADNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKMMGL*LIE 276
++D+ + D+ +S+ ++++VG++ T EE+ YF Q+G ++ + LI+
Sbjct: 102 ISDHGSFTGTDVSDRSST-VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Score = 27.5 bits (58), Expect = 8.3
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGS-VFKGKNIP--VRAATDKR-RDVETVTIYPEVPPA 437
+R GFV+++ + +A AI NG+ +G N P VR A KR + E+ E+ P
Sbjct: 250 SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGES----REMAPP 305
Query: 438 VAL-KDTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFMMREVEAVAVGLGPRGKGV 614
V L + + N+G+++ V N R T + VG P G+
Sbjct: 306 VGLGSGPRFQASGPRPTSNFGDSSGDVSHTNPWRPATSRN----------VG-PPSNTGI 354
Query: 615 RGARSRGP 638
RGA S P
Sbjct: 355 RGAGSDFP 362
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/53 (26%), Positives = 33/53 (62%)
Frame = +1
Query: 118 MADNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKMMGL*LIE 276
++D+ + D+ +S+ ++++VG++ T EE+ YF Q+G ++ + LI+
Sbjct: 102 ISDHGSFTGTDVSDRSST-VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Score = 27.5 bits (58), Expect = 8.3
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGS-VFKGKNIP--VRAATDKR-RDVETVTIYPEVPPA 437
+R GFV+++ + +A AI NG+ +G N P VR A KR + E+ E+ P
Sbjct: 250 SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGES----REMAPP 305
Query: 438 VAL-KDTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFMMREVEAVAVGLGPRGKGV 614
V L + + N+G+++ V N R T + VG P G+
Sbjct: 306 VGLGSGPRFQASGPRPTSNFGDSSGDVSHTNPWRPATSRN----------VG-PPSNTGI 354
Query: 615 RGARSRGP 638
RGA S P
Sbjct: 355 RGAGSDFP 362
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 282 GFVQFAEESSAQDAIKKANGSVFKGKNI 365
GFVQ+A ++SA+ A+ NG+ G++I
Sbjct: 298 GFVQYANKASAEHALSVLNGTQLGGQSI 325
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
++ +GFV+FA+E+ A+ + NG + + + A +K
Sbjct: 195 SKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANK 234
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 282 GFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 389
GFV+FA + A++A++K NG I + A K
Sbjct: 170 GFVEFASVNEAEEALQKKNGECLDNNKIFLDVANKK 205
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 282 GFVQFAEESSAQDAIKKANGSVFKGKNI 365
GFV+FA + AQ A++K NG + + I
Sbjct: 532 GFVEFASVNEAQKALQKMNGENLRSREI 559
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 243 IRENDGIIVNRNFGFVQFAEESSAQDAIKKANGS 344
+R NDG +R FGF+ F AQ AIK N +
Sbjct: 1 MRSNDG--KSRQFGFIGFRSAQEAQQAIKYFNNT 32
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRD 398
++ +GFV+F +A + G+V G + +R +KR D
Sbjct: 613 LSSGYGFVEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSD 656
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 273 RNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
R+FGFV +AE SSA A+K G+ + V
Sbjct: 331 RDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 363
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
++ FGFV + Q+AIK +G+ G+ I V A
Sbjct: 244 SKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 374
+G+V F + AQ A++ NG F G+ I V+
Sbjct: 120 YGYVWFNSKEDAQSAVEAMNGKFFDGRFILVK 151
>At3g57530.1 68416.m06406 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calmodulin-domain protein
kinase CDPK isoform 7 [Arabidopsis thaliana]
gi|1399277|gb|AAB03247
Length = 538
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/64 (34%), Positives = 27/64 (42%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQ 458
FG + D A S+ K K D RR+VE + PE P V LK+T
Sbjct: 74 FGVTYLCTDKETDDVF--ACKSILKKKLRTAVDIEDVRREVEIMRHMPEHPNVVTLKET- 130
Query: 459 MEDE 470
EDE
Sbjct: 131 YEDE 134
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 166 TAHLRIYVGALSDNTTVEELYDYFIQYGKMM 258
T + +++VG L+ T +E+ YF Q+G+++
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEIL 44
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 166 TAHLRIYVGALSDNTTVEELYDYFIQYGKMM 258
T + +++VG L+ T +E+ YF Q+G+++
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEIL 44
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 148 DMKQKSTAHL-RIYVGALSDNTTVEELYDYFIQYGKMM 258
+ K +S + L ++++G +S +T E L +YF +YG ++
Sbjct: 5 EQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLV 42
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
++ FGFV + Q AI NG+ G+ I V A
Sbjct: 289 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 325
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRA 377
+R FGFV + + + A ++ NG F+G+ + V A
Sbjct: 139 SRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNA 174
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
++ FGFV + Q AI NG+ G+ I V A
Sbjct: 297 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 333
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRA 377
+R FGFV + + + A ++ NG F+G+ + V A
Sbjct: 139 SRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNA 174
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 28.7 bits (61), Expect = 3.6
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = +3
Query: 276 NFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDT 455
++GFV+F EE++AQ AI KA+ +++ V KR D P P + +
Sbjct: 1116 SYGFVEFKEENAAQRAI-KASPVTIDLRSVYVE---KKRPDYIRYWDTPSTGPGIIYRSE 1171
Query: 456 QMEDESEEAYDNYGNNND 509
M + Y N G N +
Sbjct: 1172 GMSVTKD--YGNKGGNEN 1187
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 28.7 bits (61), Expect = 3.6
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +3
Query: 255 DGIIVNRNFGFVQFAEESSAQDAIKKANG-SVFKGKNIP--VRAATDKRRDVETVTIYPE 425
D + + R + FVQF+ + A AIK NG +G + P VR A K+ +
Sbjct: 241 DDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGSDQPLIVRFADPKKPRLGEQRSTFN 300
Query: 426 VPPAVALKDTQMEDESEEAYDN 491
PPA+ D + ++N
Sbjct: 301 TPPAMQHFDPNWHSQPYPQWEN 322
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
+ RNF FVQFA + A A+ + S K + V A
Sbjct: 101 MRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYA 138
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
+ RNF FVQFA + A A+ + S K + V A
Sbjct: 127 MRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYA 164
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
+ RNF F+Q+ + A A+ +N S K I V A
Sbjct: 88 IRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 125
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
+ RNF F+Q+ + A A+ +N S K I V A
Sbjct: 129 IRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 166
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 148 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKMMGL*LI 273
D K + ++VG LS +TT + L + +YG++ L L+
Sbjct: 55 DSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLV 96
>At2g21410.1 68415.m02548 vacuolar proton ATPase, putative similar
to vacuolar proton ATPase 100-kDa subunit from
Dictyostelium discoideum P|1384136|gb|AAB49621
Length = 821
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +3
Query: 372 RAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNY-----GNNNDMVFKRNLKR 536
R+AT ++ ++ET + ++ A L++ + D +++ + MVF+R L R
Sbjct: 154 RSATAQQSEIETEQVGEDLLEAPLLQEEKSVDPTKQVKLGFLTGLVPREKSMVFERILFR 213
Query: 537 ATTGQKFMMREV 572
AT G F+ + V
Sbjct: 214 ATRGNIFIRQSV 225
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 392
+R+FGFV F E A A+ +G+ G+ + V A ++
Sbjct: 53 HRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPEK 93
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
++++G +S +T E L DYF YG ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVV 33
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYG 249
+I+VG L + T EE +YF Q+G
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFG 134
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
++++G +S +T E L DYF YG ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVV 33
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYG 249
+I+VG L + T EE +YF Q+G
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFG 134
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
++++G +S +T E L DYF YG ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVV 33
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYG 249
+I+VG L + T EE +YF Q+G
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFG 134
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
+ RNF F+Q+ + A A+ N S K I V A
Sbjct: 128 IRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYA 165
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 267 VNRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
+ RNF F+Q+ + A A+ N S K I V A
Sbjct: 128 IRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYA 165
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKR 392
++ +GFV+FA+ES A+ + NG + + A +K+
Sbjct: 214 SKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 261 IIVNRNFGFVQFAEESSAQDAIKKANGSVFKGKNI 365
I + GFVQ+A + A+ A+ NG+ G++I
Sbjct: 309 IPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSI 343
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 619 PRTPLPRGPKPTATASTSLIMNFWPVVALFKFLLK 515
P PLP P P S+ LI +PV+ F+ L++
Sbjct: 105 PPRPLPPPPPPPLHFSSPLIKKVYPVIKNFQTLIE 139
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 282 GFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 380
GFV+FA A++A++K G + I ++AA
Sbjct: 226 GFVEFASAKEAENALEKKKGEYLQDGEIFLKAA 258
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMM 258
+I+VG L+ TT ++L YF Q+G+++
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVV 39
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT 383
+R FGFV F EE S DAI + + K + V + T
Sbjct: 47 SRRFGFVTFEEEKSMTDAIMIMDVEESRSKCVNVGSIT 84
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 178 RIYVGALSDNTTVEELYDYFIQYGKMMGL*LIEILDLCNSPK 303
++YV LS TT + L D F Q+G ++ + ++ + + N PK
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMV-MDKVANRPK 118
>At1g49750.1 68414.m05579 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560
Length = 494
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 622 APRTPLPRGPKPTATASTSLIMNFWPVVALFKFLL 518
AP P P P P ++SL+ +PV+ FK L+
Sbjct: 104 APPKPQPSPPTPDLPFASSLLKKVYPVLQRFKDLV 138
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
+ FV+F + A+DAI +G F G + V A RR
Sbjct: 47 YAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRR 85
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
+ FV+F + A+DAI +G F G + V A RR
Sbjct: 47 YAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRR 85
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
+ FV+F + A+DAI +G F G + V A RR
Sbjct: 47 YAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRR 85
>At5g12480.1 68418.m01466 calmodulin-domain protein kinase isoform 7
(CPK7) identical to calmodulin-domain protein kinase
CDPK isoform 7 [Arabidopsis thaliana]
gi|1399277|gb|AAB03247
Length = 535
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 327 KKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDES 473
K A S+ K K D RR+VE + P+ P V+LKD+ +D++
Sbjct: 84 KYACKSISKKKLRTAVDIEDVRREVEIMKHMPKHPNVVSLKDSFEDDDA 132
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 181 IYVGALSDNTTVEELYDYFIQYGKM 255
+YVG L+ ++++D+F YG+M
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEM 251
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 27.5 bits (58), Expect = 8.3
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGS-VFKGKNIP--VRAATDKR-RDVETVTIYPEVPPA 437
+R GFV+++ + +A AI NG+ +G N P VR A KR + E+ E+ P
Sbjct: 8 SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGES----REMAPP 63
Query: 438 VAL-KDTQMEDESEEAYDNYGNNNDMVFKRNLKRATTGQKFMMREVEAVAVGLGPRGKGV 614
V L + + N+G+++ V N R T + VG P G+
Sbjct: 64 VGLGSGPRFQASGPRPTSNFGDSSGDVSHTNPWRPATSRN----------VG-PPSNTGI 112
Query: 615 RGARSRGP 638
RGA S P
Sbjct: 113 RGAGSDFP 120
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
+ FV+F + A DAI +G F G ++ V A RR
Sbjct: 47 YAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGGRR 85
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 279 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKRR 395
+ FV+F + A DAI +G F G ++ V A RR
Sbjct: 47 YAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGGRR 85
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 270 NRNFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 371
+R FGF A ++K NG+ +G+ I V
Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKV 149
>At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative /
lysine--tRNA ligase, putative similar to SP|Q43776
Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)
{Lycopersicon esculentum}; contains Pfam profile
PF00152: tRNA synthetases class II (D, K and N)
Length = 626
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/68 (23%), Positives = 30/68 (44%)
Frame = +3
Query: 297 AEESSAQDAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESE 476
AE S+ A ++ ++ K + + + +R+D E + P A + K +DE
Sbjct: 26 AESSAGDGAGPRSKNALKKEQKMKQKEEEKRRKDEEKAEKAKQAPKASSQKAVAADDEEM 85
Query: 477 EAYDNYGN 500
+A Y N
Sbjct: 86 DATQYYEN 93
>At2g18110.1 68415.m02105 elongation factor 1-beta, putative /
EF-1-beta, putative nearly identical to eEF-1beta
[Arabidopsis thaliana] GI:398606
Length = 231
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 429 PPAVALKDTQMEDESEEAYDNYGNNNDMVFKRNLKRATT 545
PPA KDT E+E ++ D +G + K +RA +
Sbjct: 92 PPAADSKDTAAEEEDDDDVDLFGEETEEEKKAAEERAAS 130
>At1g64340.1 68414.m07291 hypothetical protein
Length = 265
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 295 SPKNQVHRMQ*KKLMVAYSKEKISLSEPQLIKDE 396
S KN + R + K+M Y K K+ + P+L +E
Sbjct: 77 SGKNSIQRSENTKMMETYPKNKMVIMNPKLNTEE 110
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,315,413
Number of Sequences: 28952
Number of extensions: 263223
Number of successful extensions: 977
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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