Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0813
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0158 + 17822049-17822151,17822230-17822443,17822540-178227...    29   2.7  
01_05_0772 + 25056973-25057285,25057678-25058006,25058113-250583...    29   3.6  
11_02_0134 - 8681176-8681193,8681452-8681987,8682028-8682544           29   4.8  
08_01_0072 - 513561-513926,514055-514189,514274-514417,514505-51...    28   8.3  

>03_04_0158 +
           17822049-17822151,17822230-17822443,17822540-17822700,
           17822811-17822956,17824048-17824110,17824199-17824291,
           17824313-17824396,17824736-17824897,17824998-17825104,
           17825715-17825812,17825940-17826208
          Length = 499

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 330 RSAMMELGLCDDLINPATNINFLGTNLSHLSYDLH 434
           RS ++E+G+ +D+ NP T  +F  T++S  +Y  H
Sbjct: 245 RSVLVEIGIAEDMHNPVTYGSF-ATSVSTFNYMCH 278


>01_05_0772 +
           25056973-25057285,25057678-25058006,25058113-25058360,
           25058481-25059396
          Length = 601

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 415 CDKXVPRKLMLVAGFIRSSHRPSSIIAERLCLCSF--FTSKINLFLS 281
           C   VPR   L+   ++     SS I +++C C +  FT  I L+L+
Sbjct: 86  CHDIVPRVAPLLQDIVKEYVNTSSYILQKVCACCYVQFTLFIELYLT 132


>11_02_0134 - 8681176-8681193,8681452-8681987,8682028-8682544
          Length = 356

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 299 NKSFSFTKFQLIERMVWKSRSXNDSRHGP 213
           NKSF   K +++E   W +R  NDS H P
Sbjct: 169 NKSFDIAK-KIMESCPWLAREENDSGHTP 196


>08_01_0072 -
           513561-513926,514055-514189,514274-514417,514505-514744,
           516325-516636
          Length = 398

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = -1

Query: 418 KCDKXVPRKLMLVAGFIRSSHRPSSIIAERLCLCSFFTSKINLFL 284
           +C K + + + L A  ++   RP  + +E L     F  +  L +
Sbjct: 203 QCPKKISKAIFLTATMVKDGQRPFDVFSEELASADVFLQESQLLI 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,697,394
Number of Sequences: 37544
Number of extensions: 325481
Number of successful extensions: 646
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)