Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0813
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)               30   1.6  
SB_16056| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_39200| Best HMM Match : SHD1 (HMM E-Value=4)                        29   4.9  
SB_25465| Best HMM Match : SHD1 (HMM E-Value=4)                        29   4.9  
SB_8207| Best HMM Match : SHD1 (HMM E-Value=4)                         29   4.9  
SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28)                  29   4.9  
SB_47188| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_42622| Best HMM Match : Gal-bind_lectin (HMM E-Value=9.1)           29   4.9  
SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_29342| Best HMM Match : SHD1 (HMM E-Value=2.8)                      29   4.9  
SB_22770| Best HMM Match : DUF1130 (HMM E-Value=9.6)                   29   4.9  
SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_39907| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)
          Length = 660

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 276 LGERKRFILLVKKLQRHNRSAMMELGLCDDLINPATNINFLGTNLSHLSYDLHNKI 443
           L +RK   L +  L R N + +  +   D L     ++  LGTN+ H++  + NKI
Sbjct: 184 LTQRKVIGLGLGPLNRANYTLIRAIARSDVLARSGVHVTQLGTNIEHIASCVQNKI 239


>SB_16056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 617 PXMKKYPPLPDLGFGIMYRTXPWGF 691
           P MKKYPPLPD+    +    PW F
Sbjct: 154 PDMKKYPPLPDIILDSV-PLIPWAF 177


>SB_39200| Best HMM Match : SHD1 (HMM E-Value=4)
          Length = 211

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 278 KFQLIERMVWKSRSXNDSRHGP 213
           +F+ IER VW S   NDSR  P
Sbjct: 121 RFEDIERQVWLSEIHNDSRRDP 142


>SB_25465| Best HMM Match : SHD1 (HMM E-Value=4)
          Length = 147

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 278 KFQLIERMVWKSRSXNDSRHGP 213
           +F+ IER VW S   NDSR  P
Sbjct: 57  RFEDIERQVWLSEIHNDSRRDP 78


>SB_8207| Best HMM Match : SHD1 (HMM E-Value=4)
          Length = 208

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 278 KFQLIERMVWKSRSXNDSRHGP 213
           +F+ IER VW S   NDSR  P
Sbjct: 42  RFEDIERQVWLSEIHNDSRRDP 63


>SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28)
          Length = 478

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 278 KFQLIERMVWKSRSXNDSRHGP 213
           +F+ IER VW S   NDSR  P
Sbjct: 121 RFEDIERQVWLSEIHNDSRRDP 142


>SB_47188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 278 KFQLIERMVWKSRSXNDSRHGP 213
           +F+ IER VW S   NDSR  P
Sbjct: 200 RFEDIERQVWLSEIHNDSRRDP 221


>SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 278 KFQLIERMVWKSRSXNDSRHGP 213
           +F+ IER VW S   NDSR  P
Sbjct: 410 RFEDIERQVWLSEIHNDSRRDP 431


>SB_42622| Best HMM Match : Gal-bind_lectin (HMM E-Value=9.1)
          Length = 112

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 278 KFQLIERMVWKSRSXNDSRHGP 213
           +F+ IER VW S   NDSR  P
Sbjct: 42  RFEDIERQVWLSEIHNDSRRDP 63


>SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 278 KFQLIERMVWKSRSXNDSRHGP 213
           +F+ IER VW S   NDSR  P
Sbjct: 385 RFEDIERQVWLSEIHNDSRRDP 406


>SB_29342| Best HMM Match : SHD1 (HMM E-Value=2.8)
          Length = 310

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 278 KFQLIERMVWKSRSXNDSRHGP 213
           +F+ IER VW S   NDSR  P
Sbjct: 200 RFEDIERQVWLSEIHNDSRRDP 221


>SB_22770| Best HMM Match : DUF1130 (HMM E-Value=9.6)
          Length = 217

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 278 KFQLIERMVWKSRSXNDSRHGP 213
           +F+ IER VW S   NDSR  P
Sbjct: 147 RFEDIERQVWLSEIHNDSRRDP 168


>SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +3

Query: 258 PFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPATNINFLGTNLSHLSYDLHN 437
           P D  +LG+      ++KK  R     ++   LC D+IN    +      L      LHN
Sbjct: 314 PVDYTELGDVHCAAAIIKKFLRELPEPLLTYELC-DVINEIVALGDRDKKLMETWSALHN 372

Query: 438 KIPXALSFA 464
           ++P A +FA
Sbjct: 373 RLP-AENFA 380


>SB_39907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = +1

Query: 73  PPIKLEEYSETMESDILNWGNKEVEELLHKENISSCLIXICKTHDIDGPCLLSFXDR--D 246
           PP+  +E     +  +  W   +V+E LH   I        + + +DG  LLS   +  D
Sbjct: 325 PPLSNKESESFAKKRVCFWNINDVQEWLHSLRIPPRFCLSFEENMVDGFLLLSLDWKGCD 384

Query: 247 FHTILSIN*NLVKEK 291
               L ++  +VK K
Sbjct: 385 LERYLMVDSKVVKRK 399


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,461,542
Number of Sequences: 59808
Number of extensions: 380281
Number of successful extensions: 729
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)