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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0813
         (706 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK001985-1|BAA92020.1|  531|Homo sapiens protein ( Homo sapiens ...    33   0.75 
BC013402-1|AAH13402.1|  531|Homo sapiens Paf1, RNA polymerase II...    33   1.3  
BC000017-1|AAH00017.1|  531|Homo sapiens Paf1, RNA polymerase II...    33   1.3  
AJ401156-1|CAC20564.1|  531|Homo sapiens PD2 protein protein.          33   1.3  
AC005239-1|AAC25503.1|  510|Homo sapiens F23149_1 protein.             33   1.3  
AK098423-1|BAC05305.1|  485|Homo sapiens protein ( Homo sapiens ...    31   3.0  
BC080593-1|AAH80593.1|  449|Homo sapiens SAMD8 protein protein.        30   9.3  
AL392111-6|CAI40909.1|  326|Homo sapiens sterile alpha motif dom...    30   9.3  
AL392111-5|CAI40908.1|  254|Homo sapiens sterile alpha motif dom...    30   9.3  
AL392111-3|CAI40906.1|  478|Homo sapiens sterile alpha motif dom...    30   9.3  
AK057811-1|BAB71586.1|  326|Homo sapiens protein ( Homo sapiens ...    30   9.3  

>AK001985-1|BAA92020.1|  531|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11123 fis, clone PLACE1006167. ).
          Length = 531

 Score = 33.5 bits (73), Expect = 0.75
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +3

Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383
           +Y  ++P I    +F  +PFDQ ++ + K   L  +K  +H+     +LG+  DLINP T
Sbjct: 34  KYCNSLPDIPFDPKFITYPFDQNRIVQYKATSL--EKQHKHDLLTEPDLGVTIDLINPDT 91


>BC013402-1|AAH13402.1|  531|Homo sapiens Paf1, RNA polymerase II
           associated factor, homolog (S. cerevisiae) protein.
          Length = 531

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +3

Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383
           +Y  ++P I    +F  +PFDQ +  + K   L  +K  +H+     +LG+  DLINP T
Sbjct: 34  KYCNSLPDIPFDPKFITYPFDQNRFVQYKATSL--EKQHKHDLLTEPDLGVTIDLINPDT 91


>BC000017-1|AAH00017.1|  531|Homo sapiens Paf1, RNA polymerase II
           associated factor, homolog (S. cerevisiae) protein.
          Length = 531

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +3

Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383
           +Y  ++P I    +F  +PFDQ +  + K   L  +K  +H+     +LG+  DLINP T
Sbjct: 34  KYCNSLPDIPFDPKFITYPFDQNRFVQYKATSL--EKQHKHDLLTEPDLGVTIDLINPDT 91


>AJ401156-1|CAC20564.1|  531|Homo sapiens PD2 protein protein.
          Length = 531

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +3

Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383
           +Y  ++P I    +F  +PFDQ +  + K   L  +K  +H+     +LG+  DLINP T
Sbjct: 34  KYCNSLPDIPFDPKFITYPFDQNRFVQYKATSL--EKQHKHDLLTEPDLGVTIDLINPDT 91


>AC005239-1|AAC25503.1|  510|Homo sapiens F23149_1 protein.
          Length = 510

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +3

Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383
           +Y  ++P I    +F  +PFDQ +  + K   L  +K  +H+     +LG+  DLINP T
Sbjct: 24  KYCNSLPDIPFDPKFITYPFDQNRFVQYKATSL--EKQHKHDLLTEPDLGVTIDLINPDT 81


>AK098423-1|BAC05305.1|  485|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25557 fis, clone JTH02756. ).
          Length = 485

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +3

Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383
           +Y  ++P I    +F  +PFDQ +  + K   L  ++  +H+     +LG+  DLINP T
Sbjct: 24  KYCNSLPDIPFDPKFITYPFDQNRFVQYKATSL--ERQHKHDLLTEPDLGVTIDLINPDT 81


>BC080593-1|AAH80593.1|  449|Homo sapiens SAMD8 protein protein.
          Length = 449

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 16/63 (25%), Positives = 22/63 (34%)
 Frame = +2

Query: 503 HXASKXRPXVWXXAIALGYXXXXXXXXXXXXXXXXXXXPXMKKYPPLPDLGFGIMYRTXP 682
           H   +  P  W   ++  Y                   P M+ YPPLPD+    + R  P
Sbjct: 174 HSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPR-IP 232

Query: 683 WGF 691
           W F
Sbjct: 233 WAF 235


>AL392111-6|CAI40909.1|  326|Homo sapiens sterile alpha motif domain
           containing 8 protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 16/63 (25%), Positives = 22/63 (34%)
 Frame = +2

Query: 503 HXASKXRPXVWXXAIALGYXXXXXXXXXXXXXXXXXXXPXMKKYPPLPDLGFGIMYRTXP 682
           H   +  P  W   ++  Y                   P M+ YPPLPD+    + R  P
Sbjct: 140 HSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPR-IP 198

Query: 683 WGF 691
           W F
Sbjct: 199 WAF 201


>AL392111-5|CAI40908.1|  254|Homo sapiens sterile alpha motif domain
           containing 8 protein.
          Length = 254

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 16/63 (25%), Positives = 22/63 (34%)
 Frame = +2

Query: 503 HXASKXRPXVWXXAIALGYXXXXXXXXXXXXXXXXXXXPXMKKYPPLPDLGFGIMYRTXP 682
           H   +  P  W   ++  Y                   P M+ YPPLPD+    + R  P
Sbjct: 140 HSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPR-IP 198

Query: 683 WGF 691
           W F
Sbjct: 199 WAF 201


>AL392111-3|CAI40906.1|  478|Homo sapiens sterile alpha motif domain
           containing 8 protein.
          Length = 478

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 16/63 (25%), Positives = 22/63 (34%)
 Frame = +2

Query: 503 HXASKXRPXVWXXAIALGYXXXXXXXXXXXXXXXXXXXPXMKKYPPLPDLGFGIMYRTXP 682
           H   +  P  W   ++  Y                   P M+ YPPLPD+    + R  P
Sbjct: 203 HSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPR-IP 261

Query: 683 WGF 691
           W F
Sbjct: 262 WAF 264


>AK057811-1|BAB71586.1|  326|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25082 fis, clone CBL07772. ).
          Length = 326

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 16/63 (25%), Positives = 22/63 (34%)
 Frame = +2

Query: 503 HXASKXRPXVWXXAIALGYXXXXXXXXXXXXXXXXXXXPXMKKYPPLPDLGFGIMYRTXP 682
           H   +  P  W   ++  Y                   P M+ YPPLPD+    + R  P
Sbjct: 140 HSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPR-IP 198

Query: 683 WGF 691
           W F
Sbjct: 199 WAF 201


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,989,631
Number of Sequences: 237096
Number of extensions: 1766639
Number of successful extensions: 2558
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2556
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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