Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0813
(706 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK001985-1|BAA92020.1| 531|Homo sapiens protein ( Homo sapiens ... 33 0.75
BC013402-1|AAH13402.1| 531|Homo sapiens Paf1, RNA polymerase II... 33 1.3
BC000017-1|AAH00017.1| 531|Homo sapiens Paf1, RNA polymerase II... 33 1.3
AJ401156-1|CAC20564.1| 531|Homo sapiens PD2 protein protein. 33 1.3
AC005239-1|AAC25503.1| 510|Homo sapiens F23149_1 protein. 33 1.3
AK098423-1|BAC05305.1| 485|Homo sapiens protein ( Homo sapiens ... 31 3.0
BC080593-1|AAH80593.1| 449|Homo sapiens SAMD8 protein protein. 30 9.3
AL392111-6|CAI40909.1| 326|Homo sapiens sterile alpha motif dom... 30 9.3
AL392111-5|CAI40908.1| 254|Homo sapiens sterile alpha motif dom... 30 9.3
AL392111-3|CAI40906.1| 478|Homo sapiens sterile alpha motif dom... 30 9.3
AK057811-1|BAB71586.1| 326|Homo sapiens protein ( Homo sapiens ... 30 9.3
>AK001985-1|BAA92020.1| 531|Homo sapiens protein ( Homo sapiens
cDNA FLJ11123 fis, clone PLACE1006167. ).
Length = 531
Score = 33.5 bits (73), Expect = 0.75
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +3
Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383
+Y ++P I +F +PFDQ ++ + K L +K +H+ +LG+ DLINP T
Sbjct: 34 KYCNSLPDIPFDPKFITYPFDQNRIVQYKATSL--EKQHKHDLLTEPDLGVTIDLINPDT 91
>BC013402-1|AAH13402.1| 531|Homo sapiens Paf1, RNA polymerase II
associated factor, homolog (S. cerevisiae) protein.
Length = 531
Score = 32.7 bits (71), Expect = 1.3
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +3
Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383
+Y ++P I +F +PFDQ + + K L +K +H+ +LG+ DLINP T
Sbjct: 34 KYCNSLPDIPFDPKFITYPFDQNRFVQYKATSL--EKQHKHDLLTEPDLGVTIDLINPDT 91
>BC000017-1|AAH00017.1| 531|Homo sapiens Paf1, RNA polymerase II
associated factor, homolog (S. cerevisiae) protein.
Length = 531
Score = 32.7 bits (71), Expect = 1.3
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +3
Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383
+Y ++P I +F +PFDQ + + K L +K +H+ +LG+ DLINP T
Sbjct: 34 KYCNSLPDIPFDPKFITYPFDQNRFVQYKATSL--EKQHKHDLLTEPDLGVTIDLINPDT 91
>AJ401156-1|CAC20564.1| 531|Homo sapiens PD2 protein protein.
Length = 531
Score = 32.7 bits (71), Expect = 1.3
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +3
Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383
+Y ++P I +F +PFDQ + + K L +K +H+ +LG+ DLINP T
Sbjct: 34 KYCNSLPDIPFDPKFITYPFDQNRFVQYKATSL--EKQHKHDLLTEPDLGVTIDLINPDT 91
>AC005239-1|AAC25503.1| 510|Homo sapiens F23149_1 protein.
Length = 510
Score = 32.7 bits (71), Expect = 1.3
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +3
Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383
+Y ++P I +F +PFDQ + + K L +K +H+ +LG+ DLINP T
Sbjct: 24 KYCNSLPDIPFDPKFITYPFDQNRFVQYKATSL--EKQHKHDLLTEPDLGVTIDLINPDT 81
>AK098423-1|BAC05305.1| 485|Homo sapiens protein ( Homo sapiens
cDNA FLJ25557 fis, clone JTH02756. ).
Length = 485
Score = 31.5 bits (68), Expect = 3.0
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +3
Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383
+Y ++P I +F +PFDQ + + K L ++ +H+ +LG+ DLINP T
Sbjct: 24 KYCNSLPDIPFDPKFITYPFDQNRFVQYKATSL--ERQHKHDLLTEPDLGVTIDLINPDT 81
>BC080593-1|AAH80593.1| 449|Homo sapiens SAMD8 protein protein.
Length = 449
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/63 (25%), Positives = 22/63 (34%)
Frame = +2
Query: 503 HXASKXRPXVWXXAIALGYXXXXXXXXXXXXXXXXXXXPXMKKYPPLPDLGFGIMYRTXP 682
H + P W ++ Y P M+ YPPLPD+ + R P
Sbjct: 174 HSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPR-IP 232
Query: 683 WGF 691
W F
Sbjct: 233 WAF 235
>AL392111-6|CAI40909.1| 326|Homo sapiens sterile alpha motif domain
containing 8 protein.
Length = 326
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/63 (25%), Positives = 22/63 (34%)
Frame = +2
Query: 503 HXASKXRPXVWXXAIALGYXXXXXXXXXXXXXXXXXXXPXMKKYPPLPDLGFGIMYRTXP 682
H + P W ++ Y P M+ YPPLPD+ + R P
Sbjct: 140 HSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPR-IP 198
Query: 683 WGF 691
W F
Sbjct: 199 WAF 201
>AL392111-5|CAI40908.1| 254|Homo sapiens sterile alpha motif domain
containing 8 protein.
Length = 254
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/63 (25%), Positives = 22/63 (34%)
Frame = +2
Query: 503 HXASKXRPXVWXXAIALGYXXXXXXXXXXXXXXXXXXXPXMKKYPPLPDLGFGIMYRTXP 682
H + P W ++ Y P M+ YPPLPD+ + R P
Sbjct: 140 HSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPR-IP 198
Query: 683 WGF 691
W F
Sbjct: 199 WAF 201
>AL392111-3|CAI40906.1| 478|Homo sapiens sterile alpha motif domain
containing 8 protein.
Length = 478
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/63 (25%), Positives = 22/63 (34%)
Frame = +2
Query: 503 HXASKXRPXVWXXAIALGYXXXXXXXXXXXXXXXXXXXPXMKKYPPLPDLGFGIMYRTXP 682
H + P W ++ Y P M+ YPPLPD+ + R P
Sbjct: 203 HSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPR-IP 261
Query: 683 WGF 691
W F
Sbjct: 262 WAF 264
>AK057811-1|BAB71586.1| 326|Homo sapiens protein ( Homo sapiens
cDNA FLJ25082 fis, clone CBL07772. ).
Length = 326
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/63 (25%), Positives = 22/63 (34%)
Frame = +2
Query: 503 HXASKXRPXVWXXAIALGYXXXXXXXXXXXXXXXXXXXPXMKKYPPLPDLGFGIMYRTXP 682
H + P W ++ Y P M+ YPPLPD+ + R P
Sbjct: 140 HSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPR-IP 198
Query: 683 WGF 691
W F
Sbjct: 199 WAF 201
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,989,631
Number of Sequences: 237096
Number of extensions: 1766639
Number of successful extensions: 2558
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2556
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -