BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0813 (706 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AK001985-1|BAA92020.1| 531|Homo sapiens protein ( Homo sapiens ... 33 0.75 BC013402-1|AAH13402.1| 531|Homo sapiens Paf1, RNA polymerase II... 33 1.3 BC000017-1|AAH00017.1| 531|Homo sapiens Paf1, RNA polymerase II... 33 1.3 AJ401156-1|CAC20564.1| 531|Homo sapiens PD2 protein protein. 33 1.3 AC005239-1|AAC25503.1| 510|Homo sapiens F23149_1 protein. 33 1.3 AK098423-1|BAC05305.1| 485|Homo sapiens protein ( Homo sapiens ... 31 3.0 BC080593-1|AAH80593.1| 449|Homo sapiens SAMD8 protein protein. 30 9.3 AL392111-6|CAI40909.1| 326|Homo sapiens sterile alpha motif dom... 30 9.3 AL392111-5|CAI40908.1| 254|Homo sapiens sterile alpha motif dom... 30 9.3 AL392111-3|CAI40906.1| 478|Homo sapiens sterile alpha motif dom... 30 9.3 AK057811-1|BAB71586.1| 326|Homo sapiens protein ( Homo sapiens ... 30 9.3 >AK001985-1|BAA92020.1| 531|Homo sapiens protein ( Homo sapiens cDNA FLJ11123 fis, clone PLACE1006167. ). Length = 531 Score = 33.5 bits (73), Expect = 0.75 Identities = 20/60 (33%), Positives = 33/60 (55%) Frame = +3 Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383 +Y ++P I +F +PFDQ ++ + K L +K +H+ +LG+ DLINP T Sbjct: 34 KYCNSLPDIPFDPKFITYPFDQNRIVQYKATSL--EKQHKHDLLTEPDLGVTIDLINPDT 91 >BC013402-1|AAH13402.1| 531|Homo sapiens Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) protein. Length = 531 Score = 32.7 bits (71), Expect = 1.3 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +3 Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383 +Y ++P I +F +PFDQ + + K L +K +H+ +LG+ DLINP T Sbjct: 34 KYCNSLPDIPFDPKFITYPFDQNRFVQYKATSL--EKQHKHDLLTEPDLGVTIDLINPDT 91 >BC000017-1|AAH00017.1| 531|Homo sapiens Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) protein. Length = 531 Score = 32.7 bits (71), Expect = 1.3 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +3 Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383 +Y ++P I +F +PFDQ + + K L +K +H+ +LG+ DLINP T Sbjct: 34 KYCNSLPDIPFDPKFITYPFDQNRFVQYKATSL--EKQHKHDLLTEPDLGVTIDLINPDT 91 >AJ401156-1|CAC20564.1| 531|Homo sapiens PD2 protein protein. Length = 531 Score = 32.7 bits (71), Expect = 1.3 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +3 Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383 +Y ++P I +F +PFDQ + + K L +K +H+ +LG+ DLINP T Sbjct: 34 KYCNSLPDIPFDPKFITYPFDQNRFVQYKATSL--EKQHKHDLLTEPDLGVTIDLINPDT 91 >AC005239-1|AAC25503.1| 510|Homo sapiens F23149_1 protein. Length = 510 Score = 32.7 bits (71), Expect = 1.3 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +3 Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383 +Y ++P I +F +PFDQ + + K L +K +H+ +LG+ DLINP T Sbjct: 24 KYCNSLPDIPFDPKFITYPFDQNRFVQYKATSL--EKQHKHDLLTEPDLGVTIDLINPDT 81 >AK098423-1|BAC05305.1| 485|Homo sapiens protein ( Homo sapiens cDNA FLJ25557 fis, clone JTH02756. ). Length = 485 Score = 31.5 bits (68), Expect = 3.0 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = +3 Query: 204 RYRRTVPAIVX*SRFPYHPFDQLKLGERKRFILLVKKLQRHNRSAMMELGLCDDLINPAT 383 +Y ++P I +F +PFDQ + + K L ++ +H+ +LG+ DLINP T Sbjct: 24 KYCNSLPDIPFDPKFITYPFDQNRFVQYKATSL--ERQHKHDLLTEPDLGVTIDLINPDT 81 >BC080593-1|AAH80593.1| 449|Homo sapiens SAMD8 protein protein. Length = 449 Score = 29.9 bits (64), Expect = 9.3 Identities = 16/63 (25%), Positives = 22/63 (34%) Frame = +2 Query: 503 HXASKXRPXVWXXAIALGYXXXXXXXXXXXXXXXXXXXPXMKKYPPLPDLGFGIMYRTXP 682 H + P W ++ Y P M+ YPPLPD+ + R P Sbjct: 174 HSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPR-IP 232 Query: 683 WGF 691 W F Sbjct: 233 WAF 235 >AL392111-6|CAI40909.1| 326|Homo sapiens sterile alpha motif domain containing 8 protein. Length = 326 Score = 29.9 bits (64), Expect = 9.3 Identities = 16/63 (25%), Positives = 22/63 (34%) Frame = +2 Query: 503 HXASKXRPXVWXXAIALGYXXXXXXXXXXXXXXXXXXXPXMKKYPPLPDLGFGIMYRTXP 682 H + P W ++ Y P M+ YPPLPD+ + R P Sbjct: 140 HSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPR-IP 198 Query: 683 WGF 691 W F Sbjct: 199 WAF 201 >AL392111-5|CAI40908.1| 254|Homo sapiens sterile alpha motif domain containing 8 protein. Length = 254 Score = 29.9 bits (64), Expect = 9.3 Identities = 16/63 (25%), Positives = 22/63 (34%) Frame = +2 Query: 503 HXASKXRPXVWXXAIALGYXXXXXXXXXXXXXXXXXXXPXMKKYPPLPDLGFGIMYRTXP 682 H + P W ++ Y P M+ YPPLPD+ + R P Sbjct: 140 HSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPR-IP 198 Query: 683 WGF 691 W F Sbjct: 199 WAF 201 >AL392111-3|CAI40906.1| 478|Homo sapiens sterile alpha motif domain containing 8 protein. Length = 478 Score = 29.9 bits (64), Expect = 9.3 Identities = 16/63 (25%), Positives = 22/63 (34%) Frame = +2 Query: 503 HXASKXRPXVWXXAIALGYXXXXXXXXXXXXXXXXXXXPXMKKYPPLPDLGFGIMYRTXP 682 H + P W ++ Y P M+ YPPLPD+ + R P Sbjct: 203 HSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPR-IP 261 Query: 683 WGF 691 W F Sbjct: 262 WAF 264 >AK057811-1|BAB71586.1| 326|Homo sapiens protein ( Homo sapiens cDNA FLJ25082 fis, clone CBL07772. ). Length = 326 Score = 29.9 bits (64), Expect = 9.3 Identities = 16/63 (25%), Positives = 22/63 (34%) Frame = +2 Query: 503 HXASKXRPXVWXXAIALGYXXXXXXXXXXXXXXXXXXXPXMKKYPPLPDLGFGIMYRTXP 682 H + P W ++ Y P M+ YPPLPD+ + R P Sbjct: 140 HSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPR-IP 198 Query: 683 WGF 691 W F Sbjct: 199 WAF 201 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 96,989,631 Number of Sequences: 237096 Number of extensions: 1766639 Number of successful extensions: 2558 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2494 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2556 length of database: 76,859,062 effective HSP length: 88 effective length of database: 55,994,614 effective search space used: 8175213644 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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