Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0813
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z82280-5|CAB05266.1|  294|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
           protein R03G5.3 protein.
          Length = 1311

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
 Frame = -1

Query: 262 KGWYGNRDXQTIAGTVRLYRAFYIXLLNSWKYSLYVIILPLL---CXPNLEYRTPSFHCI 92
           + WY +     I    R++  +Y   +  W Y  Y IIL +        +E R  S    
Sbjct: 594 ESWYRDMKHLEIVRARRVFAYYYSSTITRWHYLAYAIILSIFTRDMLSRIEIRVASVTST 653

Query: 91  LLILLVVQKSNSRS 50
           L ++L+V   N+ +
Sbjct: 654 LKLVLLVFDFNTNT 667


>U40953-2|AAB52647.1|  483|Caenorhabditis elegans Hypothetical
           protein F53B1.2 protein.
          Length = 483

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 112 SDILNWGNKEVEELLHKENISSCLIXICKTHDIDGPCLLSFXDRD 246
           +D   W  ++V   L K  ++     I   H +DG CLL+  D D
Sbjct: 9   ADPNEWRCEDVGNWLKKIGMAKYADLIAMKHKVDGKCLLALTDTD 53


>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
           protein F10F2.1 protein.
          Length = 2507

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 366 LINPATNINFLGTNLSHLSYDLHNKI 443
           +I  A N++ + T LSH  YDL N+I
Sbjct: 184 VIEDAANVDHMLTLLSHCDYDLQNEI 209


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical
           protein F10F2.1 protein.
          Length = 2507

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 366 LINPATNINFLGTNLSHLSYDLHNKI 443
           +I  A N++ + T LSH  YDL N+I
Sbjct: 184 VIEDAANVDHMLTLLSHCDYDLQNEI 209


>Z82280-5|CAB05266.1|  294|Caenorhabditis elegans Hypothetical
           protein R05A10.5 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 559 CLPSDLGNCSCDG 597
           CL S+LGNC+C G
Sbjct: 61  CLSSELGNCACSG 73


>U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical
           protein C46H3.2b protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 273 KLGERKRFILLVKKLQRHNRSAMMEL 350
           +LG  KRF L +KKL+ H R A   L
Sbjct: 314 RLGHLKRFGLTIKKLKDHQRHASNSL 339


>U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical
           protein C46H3.2a protein.
          Length = 713

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 273 KLGERKRFILLVKKLQRHNRSAMMEL 350
           +LG  KRF L +KKL+ H R A   L
Sbjct: 450 RLGHLKRFGLTIKKLKDHQRHASNSL 475


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,346,708
Number of Sequences: 27780
Number of extensions: 287986
Number of successful extensions: 634
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)