Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0812
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 74 2e-14
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 72 7e-14
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 71 2e-13
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.46
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 29 0.46
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 3.3
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 4.3
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 5.7
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 7.6
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 74.1 bits (174), Expect = 2e-14
Identities = 30/55 (54%), Positives = 47/55 (85%)
Frame = +1
Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
M+Y+AAYLL +GGK +P+A+ +E +LS+VGIEA++E+++ +I ELNGKD+D L+
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELI 55
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 255 QLIAAGREKLSSMPVGG 305
+LIAAG EKL+++P GG
Sbjct: 53 ELIAAGNEKLATVPTGG 69
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 72.1 bits (169), Expect = 7e-14
Identities = 29/55 (52%), Positives = 48/55 (87%)
Frame = +1
Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
M+Y+AAYLL +GGK +P+A+ +E +LS+VGIEA+AE+++ +I+ELNGK+++ L+
Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELI 55
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 255 QLIAAGREKLSSMPVGG 305
+LIAAG EKLS++P G
Sbjct: 53 ELIAAGNEKLSTVPSAG 69
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 70.5 bits (165), Expect = 2e-13
Identities = 28/55 (50%), Positives = 47/55 (85%)
Frame = +1
Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
M+Y+AAYLL +GGK +P+A+ +E +LS+VGIE+++E+++ +I EL+GKD+D L+
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELI 55
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 255 QLIAAGREKLSSMPVGG 305
+LIAAG EKL+++P GG
Sbjct: 53 ELIAAGNEKLATVPSGG 69
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.5 bits (63), Expect = 0.46
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = -3
Query: 236 SSVITFLSFSASASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 108
SSV T LS SAS+SIP + STS ++ V+P S++S +++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 29.5 bits (63), Expect = 0.46
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 263 NKLSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKY 117
N+ + L + S T +S S+ S+PT+ + T + + V PPS S Y
Sbjct: 522 NRKVSKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 154 AAAXVEKILSSVGIEADAEKLKKVITELNG 243
A V++I VG+E D+E K + E+ G
Sbjct: 1738 AQIFVDEIFGEVGVEKDSEDYKSNVKEIKG 1767
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 251 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 108
T LP ++V T SFS SAS T +++ +V PPST+ T
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 5.7
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +2
Query: 95 KKCVTWPRIYWLCWV 139
+K +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.4 bits (53), Expect = 7.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 272 SGRNKLSTS--LPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 123
+G LS+S L S++ T S +AS+PT I S S P+T+S
Sbjct: 75 TGSKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,641
Number of Sequences: 5004
Number of extensions: 31730
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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