BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0812 (676 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 74 2e-14 SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 72 7e-14 SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 71 2e-13 SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.46 SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 29 0.46 SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 3.3 SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 4.3 SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 5.7 SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 7.6 >SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 110 Score = 74.1 bits (174), Expect = 2e-14 Identities = 30/55 (54%), Positives = 47/55 (85%) Frame = +1 Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264 M+Y+AAYLL +GGK +P+A+ +E +LS+VGIEA++E+++ +I ELNGKD+D L+ Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELI 55 Score = 28.3 bits (60), Expect = 1.1 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = +3 Query: 255 QLIAAGREKLSSMPVGG 305 +LIAAG EKL+++P GG Sbjct: 53 ELIAAGNEKLATVPTGG 69 >SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 110 Score = 72.1 bits (169), Expect = 7e-14 Identities = 29/55 (52%), Positives = 48/55 (87%) Frame = +1 Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264 M+Y+AAYLL +GGK +P+A+ +E +LS+VGIEA+AE+++ +I+ELNGK+++ L+ Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELI 55 Score = 26.2 bits (55), Expect = 4.3 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = +3 Query: 255 QLIAAGREKLSSMPVGG 305 +LIAAG EKLS++P G Sbjct: 53 ELIAAGNEKLSTVPSAG 69 >SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C subunit|Schizosaccharomyces pombe|chr 1|||Manual Length = 110 Score = 70.5 bits (165), Expect = 2e-13 Identities = 28/55 (50%), Positives = 47/55 (85%) Frame = +1 Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264 M+Y+AAYLL +GGK +P+A+ +E +LS+VGIE+++E+++ +I EL+GKD+D L+ Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELI 55 Score = 27.5 bits (58), Expect = 1.9 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = +3 Query: 255 QLIAAGREKLSSMPVGG 305 +LIAAG EKL+++P GG Sbjct: 53 ELIAAGNEKLATVPSGG 69 >SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 536 Score = 29.5 bits (63), Expect = 0.46 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%) Frame = -3 Query: 236 SSVITFLSFSASASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 108 SSV T LS SAS+SIP + STS ++ V+P S++S +++ Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52 >SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosaccharomyces pombe|chr 1|||Manual Length = 722 Score = 29.5 bits (63), Expect = 0.46 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -3 Query: 263 NKLSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKY 117 N+ + L + S T +S S+ S+PT+ + T + + V PPS S Y Sbjct: 522 NRKVSKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570 >SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces pombe|chr 2|||Manual Length = 2493 Score = 26.6 bits (56), Expect = 3.3 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +1 Query: 154 AAAXVEKILSSVGIEADAEKLKKVITELNG 243 A V++I VG+E D+E K + E+ G Sbjct: 1738 AQIFVDEIFGEVGVEKDSEDYKSNVKEIKG 1767 >SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 244 Score = 26.2 bits (55), Expect = 4.3 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -3 Query: 251 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 108 T LP ++V T SFS SAS T +++ +V PPST+ T Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82 >SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual Length = 603 Score = 25.8 bits (54), Expect = 5.7 Identities = 6/15 (40%), Positives = 12/15 (80%) Frame = +2 Query: 95 KKCVTWPRIYWLCWV 139 +K +W RI+W+C++ Sbjct: 299 EKAESWKRIFWMCYI 313 >SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual Length = 358 Score = 25.4 bits (53), Expect = 7.6 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = -3 Query: 272 SGRNKLSTS--LPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 123 +G LS+S L S++ T S +AS+PT I S S P+T+S Sbjct: 75 TGSKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,047,641 Number of Sequences: 5004 Number of extensions: 31730 Number of successful extensions: 109 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 109 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 309878492 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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