Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0812
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     65   4e-11
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    53   2e-07
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           53   2e-07
07_01_1001 - 8460467-8460799                                           52   3e-07
07_03_0321 + 16757414-16757743                                         51   7e-07
01_06_0098 - 26416768-26416998                                         33   0.21 
05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013     29   3.4  
08_02_1093 - 24271826-24273427                                         28   5.9  

>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 28/55 (50%), Positives = 44/55 (80%)
 Frame = +1

Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
           M+ +AAYLLAVLGG T+P+A  ++ IL SVG+EA+ E+L+ +++EL GKD+  ++
Sbjct: 1   MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVI 55



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +3

Query: 255 QLIAAGREKLSSMPVGGG 308
           ++IAAGREK +S+P GGG
Sbjct: 53  EVIAAGREKFASVPSGGG 70


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/56 (39%), Positives = 38/56 (67%)
 Frame = +1

Query: 97  KMRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
           +M++++AYLLA L G   P+A  +  IL SVG E D  K++ ++++L GKD+  ++
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEII 248



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +3

Query: 255 QLIAAGREKLSSMPVGGG 308
           ++IA+GREK +S+P GGG
Sbjct: 246 EIIASGREKFASVPCGGG 263


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 21/55 (38%), Positives = 39/55 (70%)
 Frame = +1

Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
           M++++AYL+A L G ++P A  +  IL SVG E D  K++ ++++++GKD+  L+
Sbjct: 1   MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELI 55



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 255 QLIAAGREKLSSMPVGGG 308
           +LIA GREK +S+P GGG
Sbjct: 53  ELIACGREKFASVPSGGG 70


>07_01_1001 - 8460467-8460799
          Length = 110

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/55 (41%), Positives = 35/55 (63%)
 Frame = +1

Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
           MR+VAAYL+A +GG  +P    V  IL +VG + D +KL  +  ++ GKD+  +L
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEIL 55


>07_03_0321 + 16757414-16757743
          Length = 109

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 23/55 (41%), Positives = 35/55 (63%)
 Frame = +1

Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
           MR+VAAYL+A +GG  +P    V  IL +VG + D +KL  +  ++ GKD+  +L
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEIL 55


>01_06_0098 - 26416768-26416998
          Length = 76

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 151 PAAAXVEKILSSVGIEADAEKLKKVITELNGKD-VDNLLRPD 273
           P    V KI+ +V IEAD+ + K ++  L GKD V    RPD
Sbjct: 16  PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKDAVAGGPRPD 57


>05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013
          Length = 829

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 269 GRNKLSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAA 111
           G + LS SLPL  V   L  + +  +   L+        G++L PS  S++AA
Sbjct: 22  GGSPLSASLPLLGVQLVLIVAVTRVLYFLLKPLKQPRVGGIILGPSVLSRHAA 74


>08_02_1093 - 24271826-24273427
          Length = 533

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 97  KMRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKD 249
           + R  AA  +AV  G+TT AAA  +   SS G     + ++ +   L  +D
Sbjct: 3   RKREAAAAAVAVADGETTTAAARADSSSSSEGGSVCDDVVRNIFARLPARD 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,093,585
Number of Sequences: 37544
Number of extensions: 200090
Number of successful extensions: 443
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)