Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0812
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)       56   2e-08
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)       56   2e-08
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)       56   2e-08
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)...    54   9e-08
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)...    54   9e-08
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)       52   3e-07
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)...    50   2e-06
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)...    46   2e-05
At5g40720.1 68418.m04942 expressed protein contains Pfam profile...    27   8.7  

>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/55 (45%), Positives = 39/55 (70%)
 Frame = +1

Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
           M+ VAAYLLAVL GK +P +A ++ IL SVG E +  +++ ++ E+ GKD+  L+
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELI 55



 Score = 33.1 bits (72), Expect = 0.17
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +3

Query: 255 QLIAAGREKLSSMPVGGG 308
           +LIAAGREKL+S+P GGG
Sbjct: 53  ELIAAGREKLASVPSGGG 70


>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/55 (45%), Positives = 39/55 (70%)
 Frame = +1

Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
           M+ VAAYLLAVL GK +P +A ++ IL SVG E +  +++ ++ E+ GKD+  L+
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELI 55



 Score = 33.1 bits (72), Expect = 0.17
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +3

Query: 255 QLIAAGREKLSSMPVGGG 308
           +LIAAGREKL+S+P GGG
Sbjct: 53  ELIAAGREKLASVPSGGG 70


>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/55 (45%), Positives = 39/55 (70%)
 Frame = +1

Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
           M+ VAAYLLAVL GK +P +A ++ IL SVG E +  +++ ++ E+ GKD+  L+
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELI 55



 Score = 33.1 bits (72), Expect = 0.17
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +3

Query: 255 QLIAAGREKLSSMPVGGG 308
           +LIAAGREKL+S+P GGG
Sbjct: 53  ELIAAGREKLASVPSGGG 70


>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 22/55 (40%), Positives = 38/55 (69%)
 Frame = +1

Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
           M+  AA+LLAVLGG   P+A  ++ I+ +VG + D E ++ ++ E++GKD+  L+
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELI 55



 Score = 31.9 bits (69), Expect = 0.40
 Identities = 13/18 (72%), Positives = 17/18 (94%)
 Frame = +3

Query: 255 QLIAAGREKLSSMPVGGG 308
           +LIA+GREKL+S+P GGG
Sbjct: 53  ELIASGREKLASVPSGGG 70


>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 22/55 (40%), Positives = 38/55 (69%)
 Frame = +1

Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
           M+  AA+LLAVLGG   P+A  ++ I+ +VG + D E ++ ++ E++GKD+  L+
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELI 55



 Score = 31.9 bits (69), Expect = 0.40
 Identities = 13/18 (72%), Positives = 17/18 (94%)
 Frame = +3

Query: 255 QLIAAGREKLSSMPVGGG 308
           +LIA+GREKL+S+P GGG
Sbjct: 53  ELIASGREKLASVPSGGG 70


>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
          Length = 115

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/55 (41%), Positives = 37/55 (67%)
 Frame = +1

Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
           M+ VAA+LLAVL GK +P    ++ IL SVG E +  +++ ++ E+ GKD+  L+
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELI 55



 Score = 33.1 bits (72), Expect = 0.17
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +3

Query: 255 QLIAAGREKLSSMPVGGG 308
           +LIAAGREKL+S+P GGG
Sbjct: 53  ELIAAGREKLASVPSGGG 70


>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
           acidic ribosomal protein P2, Parthenium
           argentatum,SWISSPROT:RLA2_PARAR
          Length = 114

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 24/55 (43%), Positives = 34/55 (61%)
 Frame = +1

Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
           M+ VAAYLLA L G   P+ A ++KI+ SVG E D EK+    + +  +DV  L+
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELI 55


>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
           similar to acidic ribosomal protein P2b (rpp2b)
           GB:U62753 GI:2431770 from [Zea mays]
          Length = 115

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 22/55 (40%), Positives = 33/55 (60%)
 Frame = +1

Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264
           M+ +AA+LLA LGG   P +  ++KIL SVG E D  K+  + + +   DV  L+
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELI 55


>At5g40720.1 68418.m04942 expressed protein contains Pfam profile
           PF01697: Domain of unknown function
          Length = 583

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 21  FLLVDVCSRRTLFFRHYTFRVN*DLKNALRGRVFTGCAGWQD 146
           F  VDV  + T+   HY ++V    K   + RV T  A WQ+
Sbjct: 456 FAFVDV-DKSTMVINHYKYQVWDIFKEKFKRRVATYVADWQN 496


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,592,385
Number of Sequences: 28952
Number of extensions: 163931
Number of successful extensions: 388
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)