BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0812 (676 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 56 2e-08 At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 56 2e-08 At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 56 2e-08 At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 54 9e-08 At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 54 9e-08 At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 52 3e-07 At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 50 2e-06 At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 46 2e-05 At5g40720.1 68418.m04942 expressed protein contains Pfam profile... 27 8.7 >At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) Length = 115 Score = 56.0 bits (129), Expect = 2e-08 Identities = 25/55 (45%), Positives = 39/55 (70%) Frame = +1 Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264 M+ VAAYLLAVL GK +P +A ++ IL SVG E + +++ ++ E+ GKD+ L+ Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELI 55 Score = 33.1 bits (72), Expect = 0.17 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = +3 Query: 255 QLIAAGREKLSSMPVGGG 308 +LIAAGREKL+S+P GGG Sbjct: 53 ELIAAGREKLASVPSGGG 70 >At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) Length = 115 Score = 56.0 bits (129), Expect = 2e-08 Identities = 25/55 (45%), Positives = 39/55 (70%) Frame = +1 Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264 M+ VAAYLLAVL GK +P +A ++ IL SVG E + +++ ++ E+ GKD+ L+ Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELI 55 Score = 33.1 bits (72), Expect = 0.17 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = +3 Query: 255 QLIAAGREKLSSMPVGGG 308 +LIAAGREKL+S+P GGG Sbjct: 53 ELIAAGREKLASVPSGGG 70 >At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) Length = 115 Score = 56.0 bits (129), Expect = 2e-08 Identities = 25/55 (45%), Positives = 39/55 (70%) Frame = +1 Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264 M+ VAAYLLAVL GK +P +A ++ IL SVG E + +++ ++ E+ GKD+ L+ Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELI 55 Score = 33.1 bits (72), Expect = 0.17 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = +3 Query: 255 QLIAAGREKLSSMPVGGG 308 +LIAAGREKL+S+P GGG Sbjct: 53 ELIAAGREKLASVPSGGG 70 >At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D) acidic ribosomal protein P2, maize, PIR:S54179 Length = 111 Score = 54.0 bits (124), Expect = 9e-08 Identities = 22/55 (40%), Positives = 38/55 (69%) Frame = +1 Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264 M+ AA+LLAVLGG P+A ++ I+ +VG + D E ++ ++ E++GKD+ L+ Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELI 55 Score = 31.9 bits (69), Expect = 0.40 Identities = 13/18 (72%), Positives = 17/18 (94%) Frame = +3 Query: 255 QLIAAGREKLSSMPVGGG 308 +LIA+GREKL+S+P GGG Sbjct: 53 ELIASGREKLASVPSGGG 70 >At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D) acidic ribosomal protein P2, maize, PIR:S54179 Length = 111 Score = 54.0 bits (124), Expect = 9e-08 Identities = 22/55 (40%), Positives = 38/55 (69%) Frame = +1 Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264 M+ AA+LLAVLGG P+A ++ I+ +VG + D E ++ ++ E++GKD+ L+ Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELI 55 Score = 31.9 bits (69), Expect = 0.40 Identities = 13/18 (72%), Positives = 17/18 (94%) Frame = +3 Query: 255 QLIAAGREKLSSMPVGGG 308 +LIA+GREKL+S+P GGG Sbjct: 53 ELIASGREKLASVPSGGG 70 >At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) Length = 115 Score = 52.4 bits (120), Expect = 3e-07 Identities = 23/55 (41%), Positives = 37/55 (67%) Frame = +1 Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264 M+ VAA+LLAVL GK +P ++ IL SVG E + +++ ++ E+ GKD+ L+ Sbjct: 1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELI 55 Score = 33.1 bits (72), Expect = 0.17 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = +3 Query: 255 QLIAAGREKLSSMPVGGG 308 +LIAAGREKL+S+P GGG Sbjct: 53 ELIAAGREKLASVPSGGG 70 >At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E) acidic ribosomal protein P2, Parthenium argentatum,SWISSPROT:RLA2_PARAR Length = 114 Score = 49.6 bits (113), Expect = 2e-06 Identities = 24/55 (43%), Positives = 34/55 (61%) Frame = +1 Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264 M+ VAAYLLA L G P+ A ++KI+ SVG E D EK+ + + +DV L+ Sbjct: 1 MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELI 55 >At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C) similar to acidic ribosomal protein P2b (rpp2b) GB:U62753 GI:2431770 from [Zea mays] Length = 115 Score = 46.0 bits (104), Expect = 2e-05 Identities = 22/55 (40%), Positives = 33/55 (60%) Frame = +1 Query: 100 MRYVAAYLLAVLGGKTTPAAAXVEKILSSVGIEADAEKLKKVITELNGKDVDNLL 264 M+ +AA+LLA LGG P + ++KIL SVG E D K+ + + + DV L+ Sbjct: 1 MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELI 55 >At5g40720.1 68418.m04942 expressed protein contains Pfam profile PF01697: Domain of unknown function Length = 583 Score = 27.5 bits (58), Expect = 8.7 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +3 Query: 21 FLLVDVCSRRTLFFRHYTFRVN*DLKNALRGRVFTGCAGWQD 146 F VDV + T+ HY ++V K + RV T A WQ+ Sbjct: 456 FAFVDV-DKSTMVINHYKYQVWDIFKEKFKRRVATYVADWQN 496 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,592,385 Number of Sequences: 28952 Number of extensions: 163931 Number of successful extensions: 388 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 379 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 388 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1432596384 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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