BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0811 (756 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 28 1.7 SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 3.8 SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 26 5.0 SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 26 5.0 SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 6.7 SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 8.8 >SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|Schizosaccharomyces pombe|chr 2|||Manual Length = 972 Score = 27.9 bits (59), Expect = 1.7 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +2 Query: 119 SSLPITTMPLKKSKQIYEDKKSEVITNVVNK 211 SS P T + ++ IYE+K++E TN+ N+ Sbjct: 2 SSSPFTNLGNLDTEAIYENKENEYQTNITNE 32 >SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1040 Score = 26.6 bits (56), Expect = 3.8 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 4/106 (3%) Frame = +1 Query: 82 SDSKLEDDLYNSILVADYDNAVEKKQTDLRGQEERSHHKCRKQTHTKQQDELHGVRLPLW 261 +D+KL + + +L Y N +E +Q ++ + H T TK + L+ V+ + Sbjct: 824 ADNKLRTENISELLPKQYSNILENRQMGMKIFTDPKHW----TTSTKIEKALNAVKEIIK 879 Query: 262 MQGSKDIV----RECFPVEFTLIFAENNIKLMXKRDGLALTLRDDS 387 Q + I+ F FT+ F + IK + GL+ R+ + Sbjct: 880 KQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERNQA 925 >SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schizosaccharomyces pombe|chr 2|||Manual Length = 470 Score = 26.2 bits (55), Expect = 5.0 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 59 YMPTEPQSPTPNSKTIFTTASSLPITTMP 145 YMP P +P PN+ IF + P+T +P Sbjct: 418 YMPITP-TPYPNNAKIFGYPNQPPLTPIP 445 >SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|Schizosaccharomyces pombe|chr 2|||Manual Length = 1173 Score = 26.2 bits (55), Expect = 5.0 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = -1 Query: 480 LVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQSKTVALVHQLNVVFGENKCEL 304 L +LP +++PAD ++ + G +VVA S T VH ++ V C+L Sbjct: 733 LSILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLT---VHGISYVVDTGYCKL 788 >SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 429 Score = 25.8 bits (54), Expect = 6.7 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +2 Query: 173 DKKSEVITNVVNKLIRNNKMNCMEYAYRSGCKAP 274 + + + ITNV+ LI + + ++ A R CK P Sbjct: 249 EPEGDRITNVMKLLIPEDSNDSLDLAKRRSCKTP 282 >SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schizosaccharomyces pombe|chr 2|||Manual Length = 429 Score = 25.4 bits (53), Expect = 8.8 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +1 Query: 148 EKKQTDLRGQEERSHHKCRKQTHTKQQDEL 237 + K+ GQEE + HT QQDEL Sbjct: 3 DSKEDIRNGQEEDDLFSENEDNHTSQQDEL 32 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,658,557 Number of Sequences: 5004 Number of extensions: 48567 Number of successful extensions: 162 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 151 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 162 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 361294920 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -