Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0811
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    28   1.7  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   3.8  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    26   5.0  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   5.0  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    26   6.7  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    25   8.8  

>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 119 SSLPITTMPLKKSKQIYEDKKSEVITNVVNK 211
           SS P T +    ++ IYE+K++E  TN+ N+
Sbjct: 2   SSSPFTNLGNLDTEAIYENKENEYQTNITNE 32


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
 Frame = +1

Query: 82   SDSKLEDDLYNSILVADYDNAVEKKQTDLRGQEERSHHKCRKQTHTKQQDELHGVRLPLW 261
            +D+KL  +  + +L   Y N +E +Q  ++   +  H      T TK +  L+ V+  + 
Sbjct: 824  ADNKLRTENISELLPKQYSNILENRQMGMKIFTDPKHW----TTSTKIEKALNAVKEIIK 879

Query: 262  MQGSKDIV----RECFPVEFTLIFAENNIKLMXKRDGLALTLRDDS 387
             Q +  I+       F   FT+ F +  IK +    GL+   R+ +
Sbjct: 880  KQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERNQA 925


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 59  YMPTEPQSPTPNSKTIFTTASSLPITTMP 145
           YMP  P +P PN+  IF   +  P+T +P
Sbjct: 418 YMPITP-TPYPNNAKIFGYPNQPPLTPIP 445


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -1

Query: 480 LVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQSKTVALVHQLNVVFGENKCEL 304
           L +LP  +++PAD   ++  +   G   +VVA      S T   VH ++ V     C+L
Sbjct: 733 LSILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLT---VHGISYVVDTGYCKL 788


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 173 DKKSEVITNVVNKLIRNNKMNCMEYAYRSGCKAP 274
           + + + ITNV+  LI  +  + ++ A R  CK P
Sbjct: 249 EPEGDRITNVMKLLIPEDSNDSLDLAKRRSCKTP 282


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 148 EKKQTDLRGQEERSHHKCRKQTHTKQQDEL 237
           + K+    GQEE       +  HT QQDEL
Sbjct: 3   DSKEDIRNGQEEDDLFSENEDNHTSQQDEL 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,557
Number of Sequences: 5004
Number of extensions: 48567
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)