Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0811
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0106 - 20898480-20898680,20898762-20898864,20898953-208990...    29   4.0  
05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405     29   4.0  
06_01_1082 - 8847795-8848033,8848511-8848724                           28   7.0  
05_03_0308 - 12061871-12063205,12063340-12063671,12063974-12064052     28   9.2  

>09_06_0106 -
           20898480-20898680,20898762-20898864,20898953-20899047,
           20899113-20899135,20899725-20899799,20900219-20900267,
           20900349-20900414,20901257-20901306,20901688-20901812,
           20903488-20903600
          Length = 299

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 586 GFKAQWTLQPAKYDNDVLFFMYNREYNEALVLSKANRHL 702
           GF   WT +P K+DN   F    RE +E L+    +R L
Sbjct: 181 GFDGAWTKEPLKFDNS-YFLELLREESEGLLKLPTDRAL 218


>05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405
          Length = 488

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 457 VPLWENNKVYFKIVNTXRNQYLTL---SVKTTPTQNHMAYGVNSVEGFKAQW 603
           VPL+    V F I N  R ++L     ++KT+  +NH+   V  VE + A+W
Sbjct: 92  VPLFGKG-VGFDIDNATRTEHLRFFIDAIKTSKLRNHVNSMVQEVEDYFAKW 142


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 601 WTLQPAKYDNDVLFFMYNREYNEALVL 681
           W      Y  DVL F YN+EY++  V+
Sbjct: 59  WLAGKTFYAGDVLVFKYNKEYHDVAVV 85


>05_03_0308 - 12061871-12063205,12063340-12063671,12063974-12064052
          Length = 581

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 145 VEKKQTDLRGQEERSHHKCRKQTHTKQQDELHGVRLPLWMQGSKD 279
           +EK  +++   EER   + R   HT ++ ELH  +L L+M+   D
Sbjct: 60  IEKMVSNIGWSEERLQTRQRGM-HTVKETELHAAKLDLFMKRLDD 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,652,146
Number of Sequences: 37544
Number of extensions: 321278
Number of successful extensions: 1052
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)