Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0811
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49350| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)                29   4.1  
SB_40219| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_56686| Best HMM Match : Cadherin (HMM E-Value=0)                    28   7.1  
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   28   7.1  
SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)                28   9.4  
SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.4  
SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16)                  28   9.4  
SB_10966| Best HMM Match : Peptidase_C48 (HMM E-Value=1.6)             28   9.4  

>SB_49350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 998

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +2

Query: 23  PFKLFCVFSWRLYMPTEPQSPTPNSKTIFTTASSLPITTMPLKKSKQIYEDKKSEVI 193
           P +L C F W +  P +  S   +S+ +   A SL  TTM L  +++   + KSEVI
Sbjct: 131 PNELCCFFRWIIQGPKDFTSDDKSSE-VHKRALSLAQTTMSLTLTERQVRNTKSEVI 186


>SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
          Length = 355

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 384 QQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQ 479
           QQQ+WQ   R+WQ Q   +SQLE +    E Q
Sbjct: 301 QQQQWQQQQRQWQ-QQLQQSQLEQQQRQQEMQ 331


>SB_40219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 548 PKTTWPTGSTASKVLRPNGP 607
           P T+WP+    + +LRPN P
Sbjct: 18  PNTSWPSHGAQTDILRPNNP 37


>SB_56686| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1888

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 50   WRLYMPTEPQSPTPNSKTIFTTASSLPITTMPLKKSKQIYEDKKSEVITN 199
            W   +P+ P +P P+  T  T ASS   T   +  SK  +++ K  V  N
Sbjct: 1413 WDSPIPSPPGTPDPSQVTRATAASSRQ-TGSQISLSKVAFQEDKGNVFKN 1461


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +1

Query: 61  YANGTSVSDSKLEDDLYNSILVADYDNAVEKKQTDLRGQEERSHHKCRKQTHTKQQDE 234
           Y    S SDS+ E++         +  A E ++ D+R QEER+  K R ++ + + ++
Sbjct: 159 YGGSDSESDSESEEESPEEEKPRPHPVADEDERADVRRQEERTPLKRRSRSRSLRHED 216


>SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)
          Length = 1669

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 85  DSKLEDDLYNSILVADYDNAVEKKQTDLRGQEERSHHKCRKQTHTKQQ 228
           DS +ED   NSI     D+ VE K  ++     +   K +   HT+ +
Sbjct: 733 DSVVEDGNPNSISTTAVDHGVENKSGNVENYSSKDKVKEKSMNHTRSR 780


>SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1801

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = +2

Query: 41  VFSWRLYMPTEPQSPTPNSKTIFTTASSLPITTMPLKKSKQIYEDKKSEVITNVVNKLIR 220
           V +W+ Y  T+      NSK +F +  SLP +  P  KSK+  E +K+ ++  VV   + 
Sbjct: 755 VGTWKPY--TKHACVQDNSKRLFGSTLSLPESKSPKGKSKKKAE-QKTALLEYVVRHAVS 811

Query: 221 NN 226
            N
Sbjct: 812 AN 813


>SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16)
          Length = 1155

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/67 (22%), Positives = 33/67 (49%)
 Frame = +1

Query: 13  KMKTVQVILCLFVASLYANGTSVSDSKLEDDLYNSILVADYDNAVEKKQTDLRGQEERSH 192
           K+  + VI+ L + +  +N   +  S+   D+ ++I ++     +E   T +  +++ S 
Sbjct: 509 KLGVLNVIIDLAIGAYGSNNAVLLKSRRIIDVESTITLSSNRIVLENNNTGICREDDDSE 568

Query: 193 HKCRKQT 213
           HKC   T
Sbjct: 569 HKCLNVT 575


>SB_10966| Best HMM Match : Peptidase_C48 (HMM E-Value=1.6)
          Length = 495

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 175 QEERSHHKCRKQTHTKQ-QDELHGVRLPLWMQGSKDIVR 288
           Q ER H K    T TK+ QD+L   R+  W +GS+ I R
Sbjct: 28  QWERVHGKLLPNTATKRRQDQLAFFRIIAWKRGSRWIRR 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,639,248
Number of Sequences: 59808
Number of extensions: 383473
Number of successful extensions: 1307
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)