Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0811
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF003150-4|AAB54217.1|  381|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF040646-3|AAK31541.1|  946|Caenorhabditis elegans Hypothetical ...    29   3.6  
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation...    29   4.7  
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    29   4.7  
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini...    29   4.7  
AF022980-11|AAG24189.1|  330|Caenorhabditis elegans Serpentine r...    29   4.7  
U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U41530-1|AAA83273.3|  636|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    28   8.2  

>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +1

Query: 37  LCLFVASLYANGTSVSDSKLEDDLYNSILVADYDNAV--EKKQTDLRGQEERSHHKCRKQ 210
           LC F +     G  V   + E+ L +   VAD+   V  EK     R +EE+      K 
Sbjct: 382 LCFFFSEARRLGIDVGGLEQEEKLLSGKAVADFKQRVKEEKDAEKERAKEEKKRKMREKT 441

Query: 211 THTKQQDEL 237
            + K++++L
Sbjct: 442 AYNKKREDL 450


>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/63 (31%), Positives = 34/63 (53%)
 Frame = +1

Query: 43  LFVASLYANGTSVSDSKLEDDLYNSILVADYDNAVEKKQTDLRGQEERSHHKCRKQTHTK 222
           +F   +   G  V+D+K ++D  + +L +     VEK ++ L  QEERS  K R +T   
Sbjct: 737 IFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTRS-LEEQEERS-KKLRAETELL 794

Query: 223 QQD 231
           ++D
Sbjct: 795 RKD 797


>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/63 (31%), Positives = 34/63 (53%)
 Frame = +1

Query: 43  LFVASLYANGTSVSDSKLEDDLYNSILVADYDNAVEKKQTDLRGQEERSHHKCRKQTHTK 222
           +F   +   G  V+D+K ++D  + +L +     VEK ++ L  QEERS  K R +T   
Sbjct: 737 IFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTRS-LEEQEERS-KKLRAETELL 794

Query: 223 QQD 231
           ++D
Sbjct: 795 RKD 797


>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/63 (31%), Positives = 34/63 (53%)
 Frame = +1

Query: 43  LFVASLYANGTSVSDSKLEDDLYNSILVADYDNAVEKKQTDLRGQEERSHHKCRKQTHTK 222
           +F   +   G  V+D+K ++D  + +L +     VEK ++ L  QEERS  K R +T   
Sbjct: 737 IFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEKTRS-LEEQEERS-KKLRAETELL 794

Query: 223 QQD 231
           ++D
Sbjct: 795 RKD 797


>AF003150-4|AAB54217.1|  381|Caenorhabditis elegans Hypothetical
           protein T05E7.5 protein.
          Length = 381

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 79  VSDSKLEDDLYNSILVADYD--NAVEKKQTDLRGQEERSHHKCRKQTHTK 222
           +SD K E   ++S L   Y   N +EKK  DL G+ ++S  K +++ H K
Sbjct: 110 ISDLKGEAKCHDSELNRLYTIINNLEKKVEDLNGEHQKSLEKLKERLHEK 159


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +2

Query: 41  VFSWRLYMPTEPQSPTPNSKTIFTTASSLPITTMPLKKSKQIYEDKKSEVI 193
           V + R  +PT P+   P  +T  T AS L  T +P+ K+ +  E+++ EV+
Sbjct: 647 VSTQRAPVPTTPRPTAPAVQTTTTRASRLETTRVPV-KTVEDEEEEEEEVV 696


>Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 62  MPTEPQSPTPNSKTIFTTASSLPITTMPL--KKSKQIYEDKKSEVITNVVNKLIRNNKM 232
           +P  P + T  + T  TTA+  P TT  L  ++  ++YE+++ ++      +L R +++
Sbjct: 212 VPQSPTTTTSTTSTTTTTATRPPTTTTTLSYEERMRLYEERRRQIELERETELRRRSEL 270


>Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 62  MPTEPQSPTPNSKTIFTTASSLPITTMPL--KKSKQIYEDKKSEVITNVVNKLIRNNKM 232
           +P  P + T  + T  TTA+  P TT  L  ++  ++YE+++ ++      +L R +++
Sbjct: 212 VPQSPTTTTSTTSTTTTTATRPPTTTTTLSYEERMRLYEERRRQIELERETELRRRSEL 270


>AF040646-3|AAK31541.1|  946|Caenorhabditis elegans Hypothetical
           protein H17B01.4a protein.
          Length = 946

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +2

Query: 113 TASSLPITTMPLKKSKQIYEDKKSEVITNVVNKLIR 220
           TA S+ +  +PL +S+Q+ ED+  +  +N+++  IR
Sbjct: 386 TAVSVEMVDLPLSESQQMIEDEFEDGESNIISAFIR 421


>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
           germline protein5 protein.
          Length = 1200

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 483 DLVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQSKTV 355
           +L++LP    LP++  TR+      GK  +V+A      S T+
Sbjct: 781 ELIILPVYGALPSEMQTRIFDPAPAGKRKVVIATNIAETSLTI 823


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +1

Query: 127 ADYDNAVEKKQTDLRGQEERSHHKCRKQTHTK---QQDELHGVRLPLWMQGSKDIVRECF 297
           A Y +  +K+Q+  R +E+    K R QT T+   Q+ E+    L + ++ S+D+ R+C 
Sbjct: 29  ASYSSFSKKQQS--RIEEKVLEIKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCV 86

Query: 298 PVEFTLIFA 324
            ++    FA
Sbjct: 87  CIDMDAYFA 95


>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
           protein MOG-5 protein.
          Length = 1200

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 483 DLVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQSKTV 355
           +L++LP    LP++  TR+      GK  +V+A      S T+
Sbjct: 781 ELIILPVYGALPSEMQTRIFDPAPAGKRKVVIATNIAETSLTI 823


>AF022980-11|AAG24189.1|  330|Caenorhabditis elegans Serpentine
           receptor, class j protein49 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = -2

Query: 701 RCRLALESTNASLYSRLYMKNKTSLSYLAGCKVHWALKPSTLLTP*AMWFW 549
           RC +   S    L   +Y     S S L   K HW L  S ++     WFW
Sbjct: 95  RCSMLAASYGVLLIHFIYRYLIMSNSTLTNEKFHWYLTGSAVIIMLYFWFW 145


>U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical
           protein F35A5.2 protein.
          Length = 111

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 619 KYDNDVLFFMYNREYNEALVLSKAN 693
           KY+N    F YNREYN+  V S  +
Sbjct: 29  KYNNPPFCFAYNREYNDNDVTSSCS 53


>U41530-1|AAA83273.3|  636|Caenorhabditis elegans Hypothetical
           protein SSSD1.1 protein.
          Length = 636

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 2/107 (1%)
 Frame = +1

Query: 148 EKKQTDLRGQEERSHHKCRKQTHTKQQDELHGVRLPLWMQGSKDIVRECFPVE-FTLIFA 324
           E KQT  R +  R  +   + ++  +      V LP++M  +   +  CF    F     
Sbjct: 453 ETKQTIFRVRSTRPSYPPSEPSNALRYGIADNVDLPIFMLAAVFGLLFCFACGLFAWRCF 512

Query: 325 ENNIKLMXKRDGLALTLRDDSNND-GRLAYGDGKDKTSPKVSWKFVP 462
            N  K   +R   + +    +  D GR  YGDG   + P     + P
Sbjct: 513 HNKNKKSKRRKSRSNSTPSKTYQDYGRFTYGDGSSSSQPGTETYYEP 559


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +2

Query: 71  EPQSPTPNSKTIFTTASSLPITTMPLKKSKQI----YEDKKSEVITNVVN 208
           E  + T  S    TT +  PITT+P K  K +    +++  +EV +NV N
Sbjct: 274 ESTTTTTASPKTSTTLTPEPITTVPAKDVKPVTLLAFQEVSNEVTSNVSN 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,404
Number of Sequences: 27780
Number of extensions: 279245
Number of successful extensions: 1090
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)