Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0811
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.44 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
 Frame = +2

Query: 86   TPNSKTIFTTASSLPITTMPLKKS--------KQIYEDKKSEVITNVVNKLIRN 223
            TP +  I  + +++PIT++P   +        K +  D K+++ TN   K   N
Sbjct: 841  TPTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVKTQITTNTPAKKATN 894


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 20   KPFKLFCVFSWRLYMPTEPQSP 85
            +P  +F   +   YMP+EP++P
Sbjct: 946  EPLYVFVRSAPNFYMPSEPKAP 967


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 17/82 (20%), Positives = 35/82 (42%)
 Frame = +3

Query: 240  WSTPTALDARLQGYRPGVLPC*VHTYFRRKQH*ADXQARRSCFDVAR*QQQRWQTCLRRW 419
            W+ P  + +      P V       YF   +     + +R+   V + QQQ+ Q   ++ 
Sbjct: 1164 WNPPPFMPSPFMAGAPNVPTILPEQYFATSRIRGLQEQQRNAAMVQQQQQQQQQ---QQQ 1220

Query: 420  QGQDESKSQLEVRSSVGEQQGL 485
            Q Q + + Q + +    E++G+
Sbjct: 1221 QQQQQQQQQQQQQHQAREREGV 1242


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 136 DNAVEKKQTDLRGQEERSHHKCRKQTHT 219
           +NAVE+K+ +L  ++    H    + HT
Sbjct: 102 NNAVEEKRPELTNRKSVVFHHDNARPHT 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,716
Number of Sequences: 438
Number of extensions: 3498
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)