Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0810
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0492 - 10907529-10907629,10907714-10907953,10908035-109080...    30   2.8  
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376           29   3.7  
02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803...    29   3.7  
06_01_0947 - 7303828-7304172,7304806-7304898,7304984-7305196,730...    29   6.5  
12_01_0321 + 2447726-2447790,2448114-2448320,2449259-2449392,244...    28   8.6  
11_04_0125 + 13723966-13724011,13724282-13724430,13725100-137251...    28   8.6  
05_07_0170 - 28128839-28130149                                         28   8.6  
04_01_0249 - 3284107-3286377                                           28   8.6  

>02_02_0492 -
           10907529-10907629,10907714-10907953,10908035-10908098,
           10908416-10908721,10909347-10909561,10909656-10909950,
           10910493-10910597,10911112-10911180,10911433-10911519,
           10911953-10913704,10914964-10915054,10915217-10915488
          Length = 1198

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +1

Query: 217 HREKLRQVHECRCVKQFMEMYKMG-MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVF 393
           HRE+  +V E  C+K+ ME+  +G     GE  ++ +  Q ++ +++ R LY  +D D+F
Sbjct: 630 HRERYEKVLEACCLKKDMEILPLGDQTIIGERGINLSGGQ-KQRMQIARALY--QDADIF 686

Query: 394 M 396
           +
Sbjct: 687 L 687


>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
          Length = 746

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 19  GSSTTGLLGRGVSXSD*WWLRDDGLHQGTNG 111
           GS T G +G G   SD WW +D+G   G+NG
Sbjct: 369 GSRTGGTMGSGTG-SDWWWKQDNG--GGSNG 396


>02_02_0490 -
           10879761-10879861,10879946-10880185,10880274-10880337,
           10880426-10880731,10881098-10881312,10881417-10881711,
           10882193-10882357,10882477-10882527,10882657-10883109,
           10883195-10883281,10883736-10884800,10884858-10885376
          Length = 1186

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +1

Query: 217 HREKLRQVHECRCVKQFMEMYKMG-MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVF 393
           HRE+  +V E  C+K+ +E+  +G     GE  ++ +  Q ++ +++ R LY  +D D+F
Sbjct: 453 HRERYEKVLEACCLKKDLEILPLGDQTIIGERGINLSGGQ-KQRIQIARALY--QDADIF 509

Query: 394 M 396
           +
Sbjct: 510 L 510


>06_01_0947 -
           7303828-7304172,7304806-7304898,7304984-7305196,
           7305318-7305409,7305726-7305818,7305871-7305955
          Length = 306

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 588 DPVLWKYYGITVTDDNLVVIDWRKGVRRSLSPNDVMSYFMGGRRPLTPTWYL 743
           D  L   YG T  DDN +V D   G+ +    N + +  +    P+ P W L
Sbjct: 22  DEFLLSLYGFTQHDDNTLVADVVDGITQHSDHNQITNE-VRNHVPILPHWKL 72


>12_01_0321 +
           2447726-2447790,2448114-2448320,2449259-2449392,
           2449481-2449668,2450204-2450359
          Length = 249

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 841 CLVGVHHNLATTLLCLMPYASSVHPERIVSCGGKYHVGVKG 719
           C+    HN ATT +C +P    +  E+++ C    H G KG
Sbjct: 209 CIQTRDHNFATTCVCRVP--KHLREEQVIEC---VHCGCKG 244


>11_04_0125 +
           13723966-13724011,13724282-13724430,13725100-13725197,
           13725321-13725528,13725678-13725695
          Length = 172

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +1

Query: 733 HGTYLHMKLSVLDEPTTHTALNKGASWRDYDVRQPSK 843
           +G  + ++ S+  EP  H A+  G ++R+ ++ QP++
Sbjct: 11  NGAIVEVRNSMFKEPVLHDAIKIGVNFRNQELLQPAE 47


>05_07_0170 - 28128839-28130149
          Length = 436

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 669 RSLSPNDVMSYFMGGRRPLTPTWYLPPHETIRSG 770
           R LSP +VMS+    R P TP W +  +  I +G
Sbjct: 333 RCLSPTEVMSWDCKIRLPTTPPWLVSCNWNIYTG 366


>04_01_0249 - 3284107-3286377
          Length = 756

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/49 (22%), Positives = 28/49 (57%)
 Frame = +2

Query: 128 MKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDALSSSWR 274
           + +L + ++LD+  +PT +    +   +YN+   C +Y + +A + +W+
Sbjct: 365 VSDLNLFRILDNNKKPTRYRMWSQTIGQYNLLHECTRYES-EARTKNWK 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,773,477
Number of Sequences: 37544
Number of extensions: 500663
Number of successful extensions: 1340
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)