SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0809
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   182   6e-47
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   181   8e-47
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   181   8e-47
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    97   3e-21
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    94   2e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    73   3e-14
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    36   0.008
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    36   0.008
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    35   0.014
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    34   0.018
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    33   0.032
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    31   0.13 
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    31   0.23 
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    30   0.30 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    29   0.52 
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    29   0.91 
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc...    27   2.1  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.8  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    27   2.8  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   4.8  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   6.4  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    25   8.5  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   8.5  

>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  182 bits (442), Expect = 6e-47
 Identities = 91/162 (56%), Positives = 108/162 (66%)
 Frame = +1

Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 426
           R  TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+  GTGEFEAGIS
Sbjct: 69  RGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGIS 128

Query: 427 KNGQTREHALLAFTLGVKQLIVGVNKMVPLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAV 606
           K+GQTREHALLA+TLGVKQLIV VNKM             +  ++  +  +++G+NP  V
Sbjct: 129 KDGQTREHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTV 186

Query: 607 AFVPIFWMARRQHVGAFNQNAWFKGWQVERXEXXADGKCSLK 732
            FVP+        +       W++GWQ E       GK  L+
Sbjct: 187 PFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLE 228



 Score =  141 bits (341), Expect = 1e-34
 Identities = 64/68 (94%), Positives = 66/68 (97%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
           MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60

Query: 225 DKLKAERE 248
           DKLKAERE
Sbjct: 61  DKLKAERE 68


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  181 bits (441), Expect = 8e-47
 Identities = 90/162 (55%), Positives = 108/162 (66%)
 Frame = +1

Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 426
           R  TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+  GTGEFEAGIS
Sbjct: 69  RGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGIS 128

Query: 427 KNGQTREHALLAFTLGVKQLIVGVNKMVPLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAV 606
           K+GQTREHALLA+TLGVKQLIV VNKM             +  ++  +  +++G+NP  V
Sbjct: 129 KDGQTREHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTV 186

Query: 607 AFVPIFWMARRQHVGAFNQNAWFKGWQVERXEXXADGKCSLK 732
            FVP+        +       W++GWQ E       GK  L+
Sbjct: 187 PFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLE 228



 Score =  141 bits (341), Expect = 1e-34
 Identities = 64/68 (94%), Positives = 66/68 (97%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
           MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60

Query: 225 DKLKAERE 248
           DKLKAERE
Sbjct: 61  DKLKAERE 68


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  181 bits (441), Expect = 8e-47
 Identities = 90/162 (55%), Positives = 108/162 (66%)
 Frame = +1

Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 426
           R  TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+  GTGEFEAGIS
Sbjct: 69  RGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGIS 128

Query: 427 KNGQTREHALLAFTLGVKQLIVGVNKMVPLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAV 606
           K+GQTREHALLA+TLGVKQLIV VNKM             +  ++  +  +++G+NP  V
Sbjct: 129 KDGQTREHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTV 186

Query: 607 AFVPIFWMARRQHVGAFNQNAWFKGWQVERXEXXADGKCSLK 732
            FVP+        +       W++GWQ E       GK  L+
Sbjct: 187 PFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLE 228



 Score =  141 bits (341), Expect = 1e-34
 Identities = 64/68 (94%), Positives = 66/68 (97%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
           MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60

Query: 225 DKLKAERE 248
           DKLKAERE
Sbjct: 61  DKLKAERE 68


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 42/84 (50%), Positives = 59/84 (70%)
 Frame = +1

Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
           T+++    FET     +++DAPGH+ ++ NMI G SQAD  VL+++A  GEFEAG  + G
Sbjct: 303 TVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG 362

Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
           QTREHA+LA T G+  L+V +NKM
Sbjct: 363 QTREHAVLARTQGINHLVVVINKM 386



 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 35/64 (54%), Positives = 47/64 (73%)
 Frame = +3

Query: 57  KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 236
           K H+NIV IGHVD+GKST  G++++  G +DKRT+EK E+EA+E GK S+  +W LD   
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295

Query: 237 AERE 248
            ERE
Sbjct: 296 EERE 299


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 45/87 (51%), Positives = 56/87 (64%)
 Frame = +1

Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 426
           R  T+D+A   FE+ K    I DAPGHRDFI  MI G S AD AVL+V +    FE G  
Sbjct: 239 RGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFL 298

Query: 427 KNGQTREHALLAFTLGVKQLIVGVNKM 507
           +NGQTREHA L   LG+ +++V VNK+
Sbjct: 299 ENGQTREHAYLLRALGISEIVVSVNKL 325



 Score = 72.5 bits (170), Expect = 6e-14
 Identities = 31/63 (49%), Positives = 44/63 (69%)
 Frame = +3

Query: 57  KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 236
           K  +++VV GHVDSGKST  G ++++ G I+ R+++K   EA   GKGSF YAW+LD  +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234

Query: 237 AER 245
            ER
Sbjct: 235 EER 237



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 525 YSEPRFEEIKKEVSSY-IKKIGLQPSCCRF 611
           +SE RF+EIK  VS + IK +G + S   F
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHF 359


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 38/87 (43%), Positives = 55/87 (63%)
 Frame = +1

Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 426
           R  TI  A  ++ET+  +   +D PGH D+IKNMITG +  D A+++V+A  G+      
Sbjct: 100 RGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP---- 155

Query: 427 KNGQTREHALLAFTLGVKQLIVGVNKM 507
              QTREH LLA  +GVKQ++V +NK+
Sbjct: 156 ---QTREHLLLARQVGVKQIVVYINKV 179



 Score = 35.1 bits (77), Expect = 0.010
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +3

Query: 51  KEKTHINIVVIGHVDSGKSTTTGHLIYKC 137
           ++K H+NI  IGHVD GK+T T   I KC
Sbjct: 49  RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
           MGK     N+ VI HVD GKST T  L+ K G
Sbjct: 13  MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
           + V +ID+PGH DF   +       D A+++V
Sbjct: 98  FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
           MGK     N+ VI HVD GKST T  L+ K G
Sbjct: 13  MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
           + V +ID+PGH DF   +       D A+++V
Sbjct: 98  FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +1

Query: 298 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 477
           +V+ +D PGH   +  M+ G +  D A+L++A              QT EH      + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162

Query: 478 KQLIVGVNKM 507
           K +I+  NK+
Sbjct: 163 KHIIILQNKV 172


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +1

Query: 280 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 450
           FE S Y + IID PGH DF   +       D AVL++ A +G     I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196



 Score = 29.1 bits (62), Expect = 0.69
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 69  NIVVIGHVDSGKSTTTGHLIYKCGGI 146
           NI +  H+DSGK+T T  ++Y  G I
Sbjct: 61  NIGISAHIDSGKTTFTERVLYYTGRI 86


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 33.5 bits (73), Expect = 0.032
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 280 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
           F+    ++T +D PGH  F      G + AD  VL+VA   G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
           R  TI+ A   F      + +ID PGH DF   +    +  D AV I+    G
Sbjct: 77  RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129



 Score = 28.7 bits (61), Expect = 0.91
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 69  NIVVIGHVDSGKSTTTGHLIYKCG 140
           N+ +I H+D+GK+T T  ++Y  G
Sbjct: 30  NVGIIAHIDAGKTTLTEKMLYYGG 53


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 271 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
           ++ +    Y + +ID PGH DF   ++   +  +  +L+V A  G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
           Y + +ID+PGH DF   + + +   D A ++V A  G
Sbjct: 94  YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 307 IIDAPGHRDFIKNMITGTSQADCAVLIV 390
           IID PGH  F      GTS  + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 238 LSVRWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
           +S++   + +A+   +   +    ID PGH DF+  +    + +D  VL+V
Sbjct: 190 MSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240


>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 138

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
 Frame = +3

Query: 513 TEPPYSEPRFEEIKKEVSSYIKK--------IGLQPSCCRFRAHFLDGTETT 644
           +EPP +   +E+ KKE+   I+K        IGL+ S  R    +L+ T  T
Sbjct: 9   SEPPVNVSYYEQCKKELHEMIEKRQLLETSLIGLEDSIYRLEGSYLEKTSGT 60


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 590  TTQLLSLSCPFSGWHGDNMLE--PSTKML 670
            T QLL L+C +  +H DNML   P  KM+
Sbjct: 1620 TLQLLMLNCLWELFHSDNMLTNIPKRKMV 1648


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 384 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASF-ELPESNIDCVPPHAQPLVCP 223
           EH +IS +G+C+ V      + S  +   +LASF E  + +I  + PH + L  P
Sbjct: 175 EHKSISTKGACNRVRSARRPANSSKES--LLASFHETGKVHIWDIAPHLRSLDSP 227


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/62 (30%), Positives = 24/62 (38%)
 Frame = -2

Query: 288 SFELPESNIDCVPPHAQPLVCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWW 109
           S  L   N D    +    V  +PK I  I++ F  P S  S    C+Y     S D  W
Sbjct: 12  SSNLRRMNRDHSSNNTNRTVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSW 71

Query: 108 WT 103
            T
Sbjct: 72  RT 73


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +3

Query: 603 CRFR--AHFLDGTETTCWSLQPKCLVQGMAGGAXGXXS*RKMLIEA 734
           CRF   +H L   E +  S+  KCL    AG          +L+EA
Sbjct: 81  CRFSDPSHLLKAREISVLSISEKCLTSPRAGTRENALEALMLLVEA 126


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 259 IDIALWKFETSKYYV--TIIDAPGHRDFIKN 345
           I+I   + E   +++  T+ID PG  DFI N
Sbjct: 73  IEITKAELEEKNFHLRLTVIDTPGFGDFINN 103


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 581 DWATTQLLSLSCPFSGWHGDNMLEPSTKMLGSRD 682
           D  T+  L LSC +S  HG  ML+P  K+   R+
Sbjct: 212 DIDTSGNLLLSCGYSLRHGTYMLDPFVKVWDLRN 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,503
Number of Sequences: 5004
Number of extensions: 66424
Number of successful extensions: 254
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -