Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0809
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 114 8e-26
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 101 5e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 99 4e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 81 9e-16
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_33453| Best HMM Match : BRF1 (HMM E-Value=1.4) 33 0.32
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.42
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 0.97
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.2
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 2.2
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15) 29 3.9
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 28 6.8
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_41789| Best HMM Match : Mucin (HMM E-Value=0.56) 28 9.0
SB_41192| Best HMM Match : Mucin (HMM E-Value=0.56) 28 9.0
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 114 bits (274), Expect = 8e-26
Identities = 54/95 (56%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
Frame = +1
Query: 259 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 438
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 439 TREHALLAFTLGVKQLIVGVNK--MVPLNHHTVSP 537
TREHA+L +LGV QLIV +NK MV L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 101 bits (243), Expect = 5e-22
Identities = 47/114 (41%), Positives = 71/114 (62%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
T+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268
Query: 436 QTREHALLAFTLGVKQLIVGVNKMVPLNHHTVSPDLRKSRRKYPHTSRRLGYNP 597
QTREHA+LA T GVK L++ VNKM + + K +++G+NP
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +3
Query: 129 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 98.7 bits (235), Expect = 4e-21
Identities = 51/74 (68%), Positives = 54/74 (72%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+ S +
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEVLCFS-SCLLFM 59
Query: 225 DKLKAEREVVHNRY 266
KLK E H Y
Sbjct: 60 SKLKFELPCTHKIY 73
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 81.0 bits (191), Expect = 9e-16
Identities = 36/40 (90%), Positives = 37/40 (92%)
Frame = +1
Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 366
R TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 21 RGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 189 MGKGSFKYAWVLDKLKAERE 248
MGKGSFKYAWVLDKLKAERE
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_33453| Best HMM Match : BRF1 (HMM E-Value=1.4)
Length = 412
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 486 HRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGLQPSCCRFRAHFLDGTE 638
H+RSK + T+P R + KK+ S++I + +P+ +H++D E
Sbjct: 149 HKRSKSSSETDPSSHSKRQKHKKKKSSAHIDESDEEPNDIHPLSHYVDNKE 199
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.42
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +1
Query: 310 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 489
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 490 VGVNKM 507
+ NK+
Sbjct: 123 ILQNKI 128
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 307 IIDAPGHRDFIKNMITGTSQADCAVLIV 390
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 2.2
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +1
Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 60 THINIVVIGHVDSGKSTTTGHLIY 131
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
Length = 1427
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 684 PSLEPSILVEGSNMLSPCHPENGHESDS-SWVVAQSS 577
P + S+ V+G L PC ++G E+ + +W+ Q+S
Sbjct: 532 PPIRISVEVQGKTFLIPCPQQSGEEAKTIAWLAEQAS 568
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = -2
Query: 378 SAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCVPPHAQPLVCPIPKHI 208
++++ G+ + + S N G + +F PES D PH +P++ P+P+ I
Sbjct: 1897 ASVAGAGTSPFISSDGSAKPFANAGAKLFEAFGSPESGQDIEEPHFEPII-PLPEKI 1952
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 167
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/47 (25%), Positives = 19/47 (40%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 396
T I + + + +D PGH F G D +++VAA
Sbjct: 125 TQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 495 SKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGLQPSCCRFRAHFLD 629
+++ S E EP F+E+KKE+S K G R A+ LD
Sbjct: 342 AQRKPSEELAQFEPTFQELKKEISVLEKTFGPHNKQFRVSANGLD 386
>SB_41789| Best HMM Match : Mucin (HMM E-Value=0.56)
Length = 683
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 589 YNPAA-VAFVPIFWMARRQHVGAFNQNA 669
Y PA +A+VP +W +R + G +N NA
Sbjct: 655 YQPAPRMAYVPPYWNLQRLNYGIYNGNA 682
>SB_41192| Best HMM Match : Mucin (HMM E-Value=0.56)
Length = 683
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 589 YNPAA-VAFVPIFWMARRQHVGAFNQNA 669
Y PA +A+VP +W +R + G +N NA
Sbjct: 655 YQPAPRMAYVPPYWNLQRLNYGIYNGNA 682
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,404,933
Number of Sequences: 59808
Number of extensions: 502048
Number of successful extensions: 1392
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -